Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55130 270 / 3e-79 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G37360 269 / 1e-78 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55110 267 / 3e-78 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 265 / 5e-78 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G39350 265 / 2e-77 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55090 265 / 2e-77 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G53510 254 / 2e-73 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT5G13580 250 / 7e-72 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT1G31770 182 / 3e-48 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT5G06530 181 / 9e-48 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036100 [exp] 1326 / 0 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 324 / 4e-99 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 273 / 2e-80 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 270 / 8e-79 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 267 / 7e-78 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 265 / 5e-77 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 262 / 2e-76 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 181 / 5e-48 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.004G236500 [exp] 181 / 6e-48 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018624 [exp] 1060 / 0 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 1058 / 0 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 438 / 2e-143 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 422 / 4e-137 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 298 / 2e-89 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 298 / 2e-89 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 269 / 2e-78 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 256 / 7e-74 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 190 / 2e-53 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 175 / 8e-48 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.012G045100.1 pacid=42782989 polypeptide=Potri.012G045100.1.p locus=Potri.012G045100 ID=Potri.012G045100.1.v4.1 annot-version=v4.1 ATGAAGAACCTAGGCCGGTCAGATGCAAATAACAATCTTGAGACTCTCTTGGACATGGACAAAACGGCATTACGTAAGAAAAATGGAGTGCCAGCGGAAC CCCGGAAGATGATGGCAGGACATGGCCTGGAGTTCAAGAACCTGTCATATAGTGTCATGAAAAAGCAGAAGAAAGACGGGGTGTGGATCACCAAAGAAGC ATATCTTCTCAATGATATCTCTGGACAGGCTATAAGGGGTGAGGTTATGGCTATTATGGGGCCTAGTGGTGCTGGGAAGTCCACTTTTCTTGACGCCATT GCTGGTCGGATTGCAAGAGGGAGTCTCCAGGGATCTGTTCGGATAGATGGAAAACCGGTAACTACAAGCTACATGAAGATGATTTCATCGTACGTAATGC AAGATGACCAGCTCTTCCCCATGTTGACAGTTTTTGAGACCTTTATGTTCGCAGCTGAAGTCAGACTTCCTCCTTCAGTTTCCAGGGCTGAGAAGAAGAA AAGAGTCGATGAGCTCCTTCACCAACTGGGTTTAACGAGTGCAACACATACGTATATTGGGAACGAGGGAAACAGAGGAGTGTCAGGAGGGGAAAGGCGA AGAGTGTCTATAGGAATTGATATTATCCATAAGCCATCCCTGCTGTTCCTTGATGAACCTACTTCTGGTCTTGATTCTACAAGTGCTTACAGTGTGGTTG AAAAGGTGAAGGACATAGCTCGGGGTGGTAGTATAATCTTGATGACCATCCACCAGCCATCTTTCAGGATTCAAATGCTCTTGGACCGTATCACGATTCT TGCAAGGGGAAGACTGATATATATGGGAAGCCCAGTTGCTCTTCCTAACTATCTTTCTAGATTTGGAAGGCCTCTTCCTGATGGTGAAAACAGCATTGAG TATTTCCTGGACGTGATCAAGGAGTATGATGAATCAACCGTGGGACTTGATCCCCTTGTGTTTTACCAACGCGATGGTATCAAACCGGATCAAGCGGCAC AGACACCAGTCCGCAAAACACCAAGAACTGCCAGGACACCACGTACTCCTTACATGAAGACCCCTCTGTCAAAGTATGCCATCAGCCTCCGAAGCCAAGG ATTCTCGGGTACAGGGGATATGACATCTCAAGCGGACTCTGGTCAATTTGATTACTATGACGAAGATGATGACGAGGAATTTGACAACTCCCTGGAACGG AAACCTGCACGCACACCAATGCAAAGTGGTGTTCATAATCCTCGTTTGGCTTCTCAATTCTACAAAGAGTTTCCAGTCTGGGTCTACCATGGTATCAAAG GAACTCCTCGCCGAGCACCGTCATGGACTCCTGCGAGAACTCCAGGAAGGACACCCGGGAAAACACCAATGACTGGGCCAAGAAGCCAATCTTCAAGCCG ATTCTCAACACCACAGCATGTTGTTTCGCGTCCAAAACCCCCAGAATTTTCTAACCCCTCGCTTGACCCATATTCCCCTTCTTACGAAGAATTCAGTTGT GAGGAAGAGCTTGATGAGTCAGATCACGGTCCTAAATTTGCAAACCCATGGCTCCGGGAGGTAGCAGTTCTTTCATGGCGCACAGTACTTAACGTGGTTC GCACTCCTGAGCTTTTCCTCTCGAGAGAGATCGTATTAGCTGTTATGGCACTCATTCTATCCTCACTTTTCAAGAACCTGGGTCATCCATCTTTCCAAGA CATTAACAGGCTTCTCAATTTCTACATCTTCGCAGTTTGTCTTGTTTTCTTTTCATCCAATGATGCTGTCCCAACTTTCATCCAAGAAAGGTTCATCTTC ATCAGAGAAACCGCCCACAATTCCTACCGCGCTTCTTCCTATGTCATCTCCTCACTCATAGTGTATCTCCCTTTTTTCGCTGTACAAGGCTTGACATTTG CTGCCATCACCAGATTCTTGCTTCATCTGAAAAGCAATCTCTTCAACTTTTGGTTGATTCTTTATGCATCCCTCATAACTACTAATGCCTATGTGATGCT TGTTAGCGCGCTTGTCCCGAGTTACATCACAGGTTATGCCGTCGTGATTGCGACAACTGCTCTATTCTTCCTGACCTGTGGGTTCTTTTTGAAGCGCTTG CAGATACCGGTCTACTGGAGGTGGCTCCATTACATATCTGCAATTAAATATCCCTTTGAGGGAATGCTATCAAATGAGTTTAAAGGCTCAAGATGCTATT CAGGGAACCCTTCAGAACTTTCACCAGGCCCTCTCGGAGAGATTAGACTCAGCCAACTGCATAATGACTCAAAATTAGAGCCAAACTGCATGTTGATTGG GCAAGATATTCTATTCTCCATGGATATTAAGATGGACAGTATTTGGTATGACATTGCTATCTTGTTAGCTTGGGGAGTTCTTTACCGATTCTTCTTCTAC CTGGTTCTTAGATTCTACTCCAACAATCAGAGGAAATGA
AA sequence Show only first row Show all	>Potri.012G045100.1 pacid=42782989 polypeptide=Potri.012G045100.1.p locus=Potri.012G045100 ID=Potri.012G045100.1.v4.1 annot-version=v4.1 MKNLGRSDANNNLETLLDMDKTALRKKNGVPAEPRKMMAGHGLEFKNLSYSVMKKQKKDGVWITKEAYLLNDISGQAIRGEVMAIMGPSGAGKSTFLDAI AGRIARGSLQGSVRIDGKPVTTSYMKMISSYVMQDDQLFPMLTVFETFMFAAEVRLPPSVSRAEKKKRVDELLHQLGLTSATHTYIGNEGNRGVSGGERR RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIILMTIHQPSFRIQMLLDRITILARGRLIYMGSPVALPNYLSRFGRPLPDGENSIE YFLDVIKEYDESTVGLDPLVFYQRDGIKPDQAAQTPVRKTPRTARTPRTPYMKTPLSKYAISLRSQGFSGTGDMTSQADSGQFDYYDEDDDEEFDNSLER KPARTPMQSGVHNPRLASQFYKEFPVWVYHGIKGTPRRAPSWTPARTPGRTPGKTPMTGPRSQSSSRFSTPQHVVSRPKPPEFSNPSLDPYSPSYEEFSC EEELDESDHGPKFANPWLREVAVLSWRTVLNVVRTPELFLSREIVLAVMALILSSLFKNLGHPSFQDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIF IRETAHNSYRASSYVISSLIVYLPFFAVQGLTFAAITRFLLHLKSNLFNFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRL QIPVYWRWLHYISAIKYPFEGMLSNEFKGSRCYSGNPSELSPGPLGEIRLSQLHNDSKLEPNCMLIGQDILFSMDIKMDSIWYDIAILLAWGVLYRFFFY LVLRFYSNNQRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55130		ABCG19, ATWBC19	ATP-binding cassette G19, whit...		Potri.012G045100 [exp]	0	1
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G047500 [exp]	9.00	0.9435
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.005G089100 [exp]	17.26	0.9381
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048100 [exp]	18.97	0.9228
AT4G14746			unknown protein		Potri.003G057700 [exp]	23.15	0.9306
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Potri.002G256200 [exp]	25.27	0.8295
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	27.27	0.9289
					Potri.011G107500 [exp]	27.82	0.8072
AT4G34150			Calcium-dependent lipid-bindin...		Potri.001G301900 [exp]	30.98	0.8552
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.001G142900 [exp]	30.98	0.9196
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	32.51	0.9272

Compare expression of checked genes

Potri.012G045100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.