Plant FIBer expression Database

Potri.012G045200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17910 388 / 5e-135 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1)
AT1G48510 213 / 6e-66 Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031335
[exp]
422 / 6e-146 AT3G17910 414 / 3e-142 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1)
Lus10031907
[exp]
363 / 8e-120 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02104 SURF1 SURF1 family
Representative CDS sequence
>Potri.012G045200.1 pacid=42783610 polypeptide=Potri.012G045200.1.p locus=Potri.012G045200 ID=Potri.012G045200.1.v4.1 annot-version=v4.1
ATGGCTTCCATGTCCAGAACTCTAACAAGGAATTTCCGTAACACTCTTCAGCTTAGAAGTGGCGGGTCCCTCGACTCCCTTCCGAAATATTGGATCCCGT
CTTCATCTTCATCATCTCCCTTTTGTAGCTCCGCTTCTGCTGCCACCATCTCTGCACAGCCTCCAGAAAAAGAGAGTGGTTCAAGATTGTCAAAATGGTT
ACTCTTTTTACCTGGAGCTATCACTTTTGGCCTTGGAACTTGGCAGGTTCTTAGAAGGCAGGACAAGATCAAAATGCTGGAATATAGAGAGGGGAGATTG
GCAATGGAACCGATGAAGTTCAATGATATATCTCCATCTAGTGAACAGCTGGATGATTTAGAGTTCAGAAGAGTGGCATGCAAAGGAGTTTTTTATGATA
AAATGTCAATCTATGTGGGGCCACGTTCTAGAAATATTTCTGGAATCACTGAAAATGGCTACTATATCATTACACCACTTATGCCAGTCTCCAAAAACCC
TGAGTGTGTGCAGTCACCGATTCTTGTCAATAGAGGATGGGTACCCCGTAGCTGGAAAGACAATTCTTTGGAAGTTTCACAAGATGATGAACAACCTTCA
GATATAGCAATGGCATCTGCCCAAGGGAGTGAGAAAAGCTCGTGGTGGAGATTTTGGTCCAGAAAGCCAAAAACTATTGAGGAAAAAATCCCTTCCATCG
CTCCTGTAGAAGTTGTTGGAGTCGTTCGTGGTAGTGAAAAACCCAGCATTTTTGTTCCTGCAAATGATCCAAGCTCCTTCCAGTGGTTCTATGTTGATGT
TCCCGCAATTGCCCGTGTTTGTGGGCTTCCTGAGAATACCATATATGTGGAAGACATTAATGAAAACTTTAATTCAGGCTGTCCTTACCCTGTACCCAAG
GATGTTAATGCCTTGATTCGAAGTTCAGTCATGCCACAGGACCATCTCAATTATACACTGACCTGGTATTCTCTCTCTGCTGCTGTAACATTCATGGCCT
TTAAGAGACTAAGGCCAAAAAAGAGCCGAAGATAG
AA sequence
>Potri.012G045200.1 pacid=42783610 polypeptide=Potri.012G045200.1.p locus=Potri.012G045200 ID=Potri.012G045200.1.v4.1 annot-version=v4.1
MASMSRTLTRNFRNTLQLRSGGSLDSLPKYWIPSSSSSSPFCSSASAATISAQPPEKESGSRLSKWLLFLPGAITFGLGTWQVLRRQDKIKMLEYREGRL
AMEPMKFNDISPSSEQLDDLEFRRVACKGVFYDKMSIYVGPRSRNISGITENGYYIITPLMPVSKNPECVQSPILVNRGWVPRSWKDNSLEVSQDDEQPS
DIAMASAQGSEKSSWWRFWSRKPKTIEEKIPSIAPVEVVGVVRGSEKPSIFVPANDPSSFQWFYVDVPAIARVCGLPENTIYVEDINENFNSGCPYPVPK
DVNALIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLRPKKSRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17910 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 31... Potri.012G045200
[exp]
0 1
AT2G15430 NRPE3A, NRPD3, ... DNA-directed RNA polymerase fa... Potri.009G097600
[exp]
3.46 0.7829 RPB36.2
Potri.001G340100
[exp]
4.00 0.7966
AT2G35795 Chaperone DnaJ-domain superfam... Potri.006G131200
[exp]
5.00 0.7827
AT4G35490 MRPL11 mitochondrial ribosomal protei... Potri.007G058600
[exp]
6.92 0.7943
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.018G061050
[exp]
7.34 0.7867
AT1G73940 unknown protein Potri.001G453400
[exp]
8.48 0.7620
AT4G25315 Expressed protein (.1.2) Potri.004G189300
[exp]
17.02 0.7586
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.012G108600
[exp]
17.14 0.7439
AT3G47520 pNAD-MDH, MDH plastidic NAD-dependent malate... Potri.017G102000
[exp]
17.49 0.7303 NEMDH.1
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Potri.001G222700
[exp]
19.44 0.7017 FUS12.2

Potri.012G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.