Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17920 916 / 0 Outer arm dynein light chain 1 protein (.1.2) AT1G48540 891 / 0 Outer arm dynein light chain 1 protein (.1.2) AT1G78230 56 / 2e-07 Outer arm dynein light chain 1 protein (.1) AT5G22320 53 / 9e-07 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G14390 44 / 0.0005 Leucine-rich repeat protein kinase family protein (.1) AT5G19680 44 / 0.0006 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036300 [exp] 1747 / 0 AT1G48540 867 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 70 / 6e-12 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 52 / 2e-06 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.015G024800 [exp] 47 / 0.0001 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.006G220100 [exp] 46 / 0.0002 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G357700 [exp] 44 / 0.0007 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017994 [exp] 868 / 0 AT1G48540 685 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Lus10041988 [exp] 525 / 3e-169 AT3G17920 365 / 1e-111 Outer arm dynein light chain 1 protein (.1.2) Lus10041989 [exp] 71 / 5e-15 AT3G17920 64 / 3e-14 Outer arm dynein light chain 1 protein (.1.2) Lus10033407 [exp] 54 / 7e-07 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 51 / 6e-06 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10038534 [exp] 51 / 7e-06 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10003624 [exp] 47 / 8e-05 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10003229 [exp] 44 / 0.0008 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10026415 [exp] 44 / 0.0008 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10038875 [exp] 44 / 0.001 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G045300.1 pacid=42782684 polypeptide=Potri.012G045300.1.p locus=Potri.012G045300 ID=Potri.012G045300.1.v4.1 annot-version=v4.1 ATGCCTCACCCCTTCTCTTCAAACGCAAACAGACAAACGAACAATCTCCCTCTCCCTCTTCCTTCACAGAAAAACCATGATACCCATTTCTCCCTTCTAT TCAATCCTTCCAAAACCTCCTTTCTCTCTCTAAATTCACTCTTTCTCCCTCTCTCTATAATGGCGATCGTAACAGGAGATCGTTACTTGGAAAAACTAGT CAAATTCGTCGAAGAACAAGCCGGTCCGTTAATTGACGGAACCCTAGTCTTGAAGCTCAACCCAGCTGGTCTCCACTACGTGAATTCGCGACTCGAATCA CTACACGAGCTGGAGAATTTGTTATCCGGAGCTCCGGTCGATTATCTTCGCGCTTACGTTTCTGACCTTGGTGACCACCGTGCTCTCGAGCAGTTGCGGC GTATTCTACGTTTGTTGACGGAGTTGAAGGTTGTTTCGGTCTTGCCTCTTCCGACGCGTGATCCCACGCCGGTTTGTTTGGTTCCGTTTGGGAGGTTGAG GGTTTTGGAACTTAGAGGTTGTGATTTGTCTACCTCGGCTGCGAAAGGGTTGCTTGAATTGAGACATACTTTAGAGAAGATTGTTTGTCACAATTCTACT GATGCTTTACGGCATGTATTTGCAAGTAGGATTGCTGAGATAAAGGACTCGCCACAATGGAGTCGGTTGTCATTTGTATCTTGTGCGTGTAATCGATTGG TTTTGATGGATGAGTCTTTGCAACTTCTTCCTGCAGTGGAAACTCTTGATTTGAGTCGAAATAAGTTTGCGAAGGTGGATAATTTGCGGAAGTGTACCAA ATTGAAGCACTTGGATCTTGGGTTCAATCATCTGAGATCAATTGCACCCTTTTGTGAGGTGTCCTGTCACATTGTTAAACTTGTTTTGAGGAACAATGCT CTAACTACATTACATGGGCTTGAGAATTTGAAGTCACTTGAAGCACTTGATGTATCCTGCAATATAATTTCCAATTTCTCAGAGCTGGAGTTCCTTGCTA GCCTCCCATGTCTACAAAACTTGTGGTTGGAAGGAAATCCTTTGTGCGGTGCCCGATGGTATCGAGCTCAAGTATTCAGTTATTTTGTTCATCCAGATGC TGTGAAGTTAGATGACCGGGAAATTAGCACAAGGGAGTTTTGGAAGAGGCAAATCATAATTGCCAGCAGGCAGAAACAACCAGCCAGCTTTGGATTTTAT TCTCCTGCAAAAGGAGATGCTCATGGAGTGGGGATTATTAACAGGAAAAGGGGAAAAGTATCTCGTCTTGCTTCAATTGCAAATAAAGAAGAGAGCATGT ATTTTTCTTCTGACCACGAGTCTCCAACTTGTGATTATGAGATTCAAAGCAAAGAGGAGAATGCCATGTCTGATGACGAAGCTGAAATAGTTGATCTAAT TAACAGAGTTGAGCTCATGAAAAAGGAGCGTTCTATTCTTTGGTTGCGAGAATTTAAGGAGTGGATGGATCATGAATCAGAGAATATTGTGGATTGCAGT ACATATTGTGGGGTTACATTGCATCATGCCAAGGAAAATCATCCAATAAACAAGTCAACACAGAAGGACCACTGTGATAGTTCTAGATATTCCTTGGATG CTCTTCAAGCTTCAGGAGATGAGACCAGCACAAATCTCTTTGAGTCTGATAGTTCATTTGTTGACACTGGTTCATATGGTGGGGTTGCTTTACCAGGTAT GGGGAACATGAATCTAGGACAGAAGCATCAAAAGTCTTATTCAAATGAAGGGTGTGATAGCATGTCTATGCAAGGTAAAAGTTCTCACACAGATAGCTCT ACTGTCCAAGGAGTCCATACAATACTTGAAAATGGAAGCATATCACTGTTAACCGCTCATTCATCTTCTGCTTATCCTAGGTCTCCTCCTCATTACGAGG AGGACATTTTGCATCGACGCCACAACTTGGTGGAAGAAATTCTGCAGCTACCTGCAGAGTCCTATTCAGTGGCATCATCCGATGGTAATACAAGCTCTAG TGATGATGATTTATATGAACTTGGGCCTTCGTCATATGAAGTTGATAAATCAGAGAATGGAGAGTACTTGAATCCCGGGGCTGGAGGGCACTTATTTTCC AATCTTTTGAAGGATCAAGGACATGGAATTCATCATGTGAGGAAAGAGGACAATTATCTATTTGATTCACAAACCTCTAATTCACCAAAACTCTTAAATT CAAACTGCAATGATTTTTCCTCTGGTTCCCATGATATTGAAATTGCTAATTTTGCCAACCAAGAGGCTTATTTACTGGAGAAGAAGAAAAACAAAAGGAA ATCAAGAAGAAGAGTCATTTCTCTGTTAGAGAATGTGGTTGGCAGGATAGGGAGACCAGAAAAATCAGATGGAAATGAGGATACTTGTGGAGCTGATTTG GTGGAAGAGCAGAGGGAAAAAATTGTTCATGGGAGTGGTTTTCATGAAATTATTGATAAAAAACAGCTGTACACAAACTCTATTGCAACCTTGGATGCTG CAAATGTCACTGGATTCTCTGATGATTTTATTGAGAAATATTTTAATGAGAATGTTGCCGATTCCAGAATTAATGAGAGCATTAGGAGTTATATGTGTTG TGATTGTGTACTTGAGCCAGAATCCTTGTGCAGAGAAAGAGAAGTAGTCTTGTTGCTGAGCAGTGAAGACAAGCTGTATGTACTGCTCATTGATGTAGCA TTTGATGGATCAGGAAGCATTTTAAGTTTGCTGGGTTGGTATAGGGTTGAAGATGTTAGGGAAGTTTTAGTTGGTATAGGACTTCAGGTCGTGAGGGTAT ACATTGAGAGGGGAGCAACCTACCTATTTCTAACACGGAGCATTGAGAAGTCAAGGCAGTTACTCCATATCTTGCAAGTTTCCAGGGCATGTTCAACAAA TAATAAATGTTTGTTAAAAAGTTTGGAGCAGGTTCAGGTCAAGTTGTTTGATCAACAAATATGTAGAGGTTCAAAACTGAGCATATTCCAATATTCTATG GTGCAGCTTTGGCACAGGCAGGATGAAGAGGATTCATGGCTTCCCAGATCACTTTTTGTAAGTGGTGGGCATGTGCTTTTGTGTGTTGAAGATTTTAAGC AGTTCAACAGTCCTTCCATGGATGCATCTTCACCTCCATATTTCTTGTTTGATTCATGTTGCTCCATCAGTGATGTGTCGGAGCTGGTCATCGAAGCCAA GGAGAGTTGGTTTGTGACCTTAGCCCTTCAAAATGCCACAAAAAGCTTCTGCCTCTCATCCATATCTCAAAAGGATGTCAAAACAACTAGCAATGATAAC GCAGCTTCAGTTTCTTTGACATGGAAGCTTAAGTGGTTCTCAAAAGAGAGCCTATTAAATTTTGTGGCTTTGTTAAAGGCAATTCATGCAGCAGCAGGGG CAGCCACAGCACCATTGCTGGTGACGCATACTTCATGA
AA sequence Show only first row Show all	>Potri.012G045300.1 pacid=42782684 polypeptide=Potri.012G045300.1.p locus=Potri.012G045300 ID=Potri.012G045300.1.v4.1 annot-version=v4.1 MPHPFSSNANRQTNNLPLPLPSQKNHDTHFSLLFNPSKTSFLSLNSLFLPLSIMAIVTGDRYLEKLVKFVEEQAGPLIDGTLVLKLNPAGLHYVNSRLES LHELENLLSGAPVDYLRAYVSDLGDHRALEQLRRILRLLTELKVVSVLPLPTRDPTPVCLVPFGRLRVLELRGCDLSTSAAKGLLELRHTLEKIVCHNST DALRHVFASRIAEIKDSPQWSRLSFVSCACNRLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCTKLKHLDLGFNHLRSIAPFCEVSCHIVKLVLRNNA LTTLHGLENLKSLEALDVSCNIISNFSELEFLASLPCLQNLWLEGNPLCGARWYRAQVFSYFVHPDAVKLDDREISTREFWKRQIIIASRQKQPASFGFY SPAKGDAHGVGIINRKRGKVSRLASIANKEESMYFSSDHESPTCDYEIQSKEENAMSDDEAEIVDLINRVELMKKERSILWLREFKEWMDHESENIVDCS TYCGVTLHHAKENHPINKSTQKDHCDSSRYSLDALQASGDETSTNLFESDSSFVDTGSYGGVALPGMGNMNLGQKHQKSYSNEGCDSMSMQGKSSHTDSS TVQGVHTILENGSISLLTAHSSSAYPRSPPHYEEDILHRRHNLVEEILQLPAESYSVASSDGNTSSSDDDLYELGPSSYEVDKSENGEYLNPGAGGHLFS NLLKDQGHGIHHVRKEDNYLFDSQTSNSPKLLNSNCNDFSSGSHDIEIANFANQEAYLLEKKKNKRKSRRRVISLLENVVGRIGRPEKSDGNEDTCGADL VEEQREKIVHGSGFHEIIDKKQLYTNSIATLDAANVTGFSDDFIEKYFNENVADSRINESIRSYMCCDCVLEPESLCREREVVLLLSSEDKLYVLLIDVA FDGSGSILSLLGWYRVEDVREVLVGIGLQVVRVYIERGATYLFLTRSIEKSRQLLHILQVSRACSTNNKCLLKSLEQVQVKLFDQQICRGSKLSIFQYSM VQLWHRQDEEDSWLPRSLFVSGGHVLLCVEDFKQFNSPSMDASSPPYFLFDSCCSISDVSELVIEAKESWFVTLALQNATKSFCLSSISQKDVKTTSNDN AASVSLTWKLKWFSKESLLNFVALLKAIHAAAGAATAPLLVTHTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	0	1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	1.00	0.8993
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	2.44	0.8554
AT5G05800			unknown protein		Potri.015G137800 [exp]	2.82	0.8552
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	3.00	0.8445
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	3.16	0.8648
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	4.89	0.8491
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	5.47	0.8407	Pt-SWP.2
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	7.48	0.8334
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	7.54	0.8257
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	8.83	0.8339

Compare expression of checked genes

Potri.012G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.