Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SRP19.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48160 187 / 2e-62 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036700 [exp] 249 / 4e-87 AT1G48160 189 / 7e-63 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011152 [exp] 191 / 8e-64 AT1G48160 176 / 1e-57 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1) Lus10043056 [exp] 177 / 9e-58 AT1G48160 156 / 1e-49 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01922 [poplar] [flax] SRP19 SRP19 protein
Representative CDS sequence Show only first row Show all	>Potri.012G045500.5 pacid=42782777 polypeptide=Potri.012G045500.5.p locus=Potri.012G045500 ID=Potri.012G045500.5.v4.1 annot-version=v4.1 ATGATGGATGGTGGAGTGCCGAATATAAAGAAATGGGTGGTGTTATATCCTGTCTACATTAACTCAAAGAAAACAATAGCTGAAGGGAGGCGGATTAGTG CAGAAAAGGCGTGTGAGAACCCTACTTGTGTTGAGATTGGTGATTGTTGTGGCCATCTCAAACTTCCATTTGCAATTGAGATTGATAAGGCGTATCCACG AGATTTCATGCAAGTAGGGAGAGTGAGAGTATTGCTGAAAAGAGAAGATGGGAGTTTATGTAATCCAGCAATTCCTTCCCGAAAACAGCTTATGTTCCAT GTTGCAGAACTGGTACCTAGACATCCTGGGAGGACCAAAAAGCAGGAGCCTGCATCCACGGCAAATGTTTCAACATCCAAGTCTGGGAAGGGTGGGAGAA AGAAAAGATAG
AA sequence Show only first row Show all	>Potri.012G045500.5 pacid=42782777 polypeptide=Potri.012G045500.5.p locus=Potri.012G045500 ID=Potri.012G045500.5.v4.1 annot-version=v4.1 MMDGGVPNIKKWVVLYPVYINSKKTIAEGRRISAEKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQVGRVRVLLKREDGSLCNPAIPSRKQLMFH VAELVPRHPGRTKKQEPASTANVSTSKSGKGGRKKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48160			signal recognition particle 19...		Potri.012G045500 [exp]	0	1	SRP19.1
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.010G066700 [exp]	3.46	0.8766
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.008G040300 [exp]	3.74	0.9024	Pt-VMA10.1
AT5G01430			Got1/Sft2-like vescicle transp...		Potri.017G036000 [exp]	6.70	0.8795
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	6.78	0.9021
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	8.48	0.8896
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	9.59	0.8825	Pt-SEC22.1
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.009G159900 [exp]	10.39	0.8116
AT1G47640			unknown protein		Potri.014G037100 [exp]	13.85	0.8290
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.018G039200 [exp]	16.61	0.8607
AT5G64180			unknown protein		Potri.012G022200 [exp]	17.20	0.8391

Compare expression of checked genes

Potri.012G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.