Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17950 120 / 3e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036900 [exp] 255 / 3e-87 AT3G17950 118 / 2e-33 unknown protein Potri.006G084400 [exp] 42 / 0.0001 AT5G02440 78 / 5e-18 unknown protein Potri.001G238900 [exp] 40 / 0.0003 AT5G02440 81 / 4e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006150 [exp] 121 / 1e-33 AT3G17950 132 / 1e-37 unknown protein Lus10027309 [exp] 114 / 5e-32 AT3G17950 121 / 7e-35 unknown protein Lus10025345 [exp] 42 / 0.0001 AT5G02440 67 / 6e-14 unknown protein Lus10024400 [exp] 42 / 0.0001 AT5G02440 88 / 1e-21 unknown protein Lus10023770 [exp] 41 / 0.0002 AT5G02440 97 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G045700.1 pacid=42783390 polypeptide=Potri.012G045700.1.p locus=Potri.012G045700 ID=Potri.012G045700.1.v4.1 annot-version=v4.1 ATGTTGGATCCAACAAACGATATCCTTCCACCTCCATCTTCCCCCACCAACTCCTCCATCTCCTCCTCCGATCTTGACACCGAGTCTACAGGGTCCTTTT TCCATGATAGAAGCACTACATTAGGTACTCTAATGGGTGTCACATTCCCTGCCATCACTTTCAGAGCACCATCCCAGCACCGTCACCCCGCCGCAGCCTC CTCCACGGTAACCGCCTCCGCGAACGGTGGAAACCCCAGGAGGAACACCAAGAAGAGAAGGAATCTGGCGGCTTCTTCGGTGGCGGAGCGGAGGAGGCGG AGGTGGTGGAGCCTGTGCCGGGATGGAGGGGGGGCTAAGCCGGCCTCTCTGGGTGAATTTCTGGAGGTGGAAAGGAGGTTCGGTGATGCCGCCGCGGAGC TTGAAGGCGTGATGGTGGCAGAGCAGCCGAGGAACGGAGGAGTGAATGGACGGTTGTTATTTGCTGATGGCAGGGTTTTGCCACCTGCAGATGTTGTTGA TGATGGTGGGTCATCATCGTCAACGGCTGGTGCTCTTTGGCGATTTCCGGTTTCACTTACAGGGATCTGCAGTGGTGGCACTGGATAA
AA sequence Show only first row Show all	>Potri.012G045700.1 pacid=42783390 polypeptide=Potri.012G045700.1.p locus=Potri.012G045700 ID=Potri.012G045700.1.v4.1 annot-version=v4.1 MLDPTNDILPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVTFPAITFRAPSQHRHPAAASSTVTASANGGNPRRNTKKRRNLAASSVAERRRR RWWSLCRDGGGAKPASLGEFLEVERRFGDAAAELEGVMVAEQPRNGGVNGRLLFADGRVLPPADVVDDGGSSSSTAGALWRFPVSLTGICSGGTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17950			unknown protein		Potri.012G045700 [exp]	0	1
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.004G021500 [exp]	3.31	0.7976
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	18.16	0.7660
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G215100 [exp]	27.34	0.7849
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	42.42	0.7485	SDH2.1
AT5G46020			unknown protein		Potri.011G060800 [exp]	47.74	0.7502
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Potri.005G138000 [exp]	54.77	0.7383
AT1G73760			RING/U-box superfamily protein...		Potri.012G053800 [exp]	128.53	0.7327
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	162.18	0.7583
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055100 [exp]	196.32	0.7348

Compare expression of checked genes

Potri.012G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.