Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17940 555 / 0 Galactose mutarotase-like superfamily protein (.1) AT3G47800 339 / 9e-116 Galactose mutarotase-like superfamily protein (.1) AT5G15140 342 / 5e-115 Galactose mutarotase-like superfamily protein (.1) AT3G01260 216 / 1e-66 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129300 [exp] 530 / 0 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 355 / 3e-122 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 352 / 5e-121 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 351 / 2e-120 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 342 / 8e-117 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 334 / 5e-114 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026181 [exp] 515 / 0 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 505 / 0 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 439 / 1e-155 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 344 / 4e-117 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 338 / 3e-115 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 338 / 4e-115 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 324 / 3e-110 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 301 / 1e-98 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 118 / 1e-32 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 115 / 7e-31 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.012G045875.1 pacid=42784143 polypeptide=Potri.012G045875.1.p locus=Potri.012G045875 ID=Potri.012G045875.1.v4.1 annot-version=v4.1 ATGGCAGATCAGAAGCCACAAATCTTTGAACTCAACAATGGGACCATGCAGGTCAAAATCACCAATCTGGGTTGCACCATTACCTCCTTGTCTTTACCTG ACAAAAATGGTAATTTGGCTGATGTGGTTCTTGGATTTGACTCTGTTGAGCCATATTTGAATCGTGTTGCACCTTATTTTGGTGCCATTGTGGGTCGAGT GGCGAACAGGATCAAAGATGGGAAGTTCACTCTTAATGGGGCAGATTACACCTTACCCGTCAACAGGCCTCCAAACAGTCTTCATGGTGGGAATAAAGGT TTTGATATAGTTGTATGGGAGGTAGCAGAGTATAAGAAAGGCGAAAAACCATCCATTACTTTTAAATACCACAGCCGTGATGGAGAGGAAGGTTACCCTG GGGATCTTTCTGTAACTGCAACTTACACACTAACTTCAAGCATGACAATGAGACTTGACATGGAAGCAGTGGCTGAGAATAAGGCCACTCCAGTGAGCTT AGCTCAGCATACTTACTGGAACCTAGCTGGCCACAACTCGGGGAACATACTTGACCAATCAGTTCAGATATGGGGATCTCATGTTACTCCTGTAGACCAG AACATAGTCCCAACAGGTGAAATCATGCCAGTTAAGGGCACTCCTTTTGACTTCACCACCGAAAAGAAGGTCGGTGCTTCAATTCACGAGGTTGGTTTAG GGTATGATCATAACTATGTGCTCGACTGTGGGGAAGGAAAGGAAGGTTTGAAGCATGCTGCAAAAGTCAAGGATCCATCTAGTTCAAGGGTCCTTGATTT GTGGACTAATACTCCCGGGATGCAGTTTTACACTGCAAACTATGTGAATGGAATTGTTGGCAAGGGAGGTGCTGTTTATGGAAAGCACTCAGGACTATGC TTGGAGACACAGGGATTTCCTAATGCCATCAACCAACCAAACTTCCCGTCGGTGGTCATTCAACCCGGCGAGAAGTATAAGCACACTATGTTGTTCGAGT TTTCAATCGAGTGA
AA sequence Show only first row Show all	>Potri.012G045875.1 pacid=42784143 polypeptide=Potri.012G045875.1.p locus=Potri.012G045875 ID=Potri.012G045875.1.v4.1 annot-version=v4.1 MADQKPQIFELNNGTMQVKITNLGCTITSLSLPDKNGNLADVVLGFDSVEPYLNRVAPYFGAIVGRVANRIKDGKFTLNGADYTLPVNRPPNSLHGGNKG FDIVVWEVAEYKKGEKPSITFKYHSRDGEEGYPGDLSVTATYTLTSSMTMRLDMEAVAENKATPVSLAQHTYWNLAGHNSGNILDQSVQIWGSHVTPVDQ NIVPTGEIMPVKGTPFDFTTEKKVGASIHEVGLGYDHNYVLDCGEGKEGLKHAAKVKDPSSSRVLDLWTNTPGMQFYTANYVNGIVGKGGAVYGKHSGLC LETQGFPNAINQPNFPSVVIQPGEKYKHTMLFEFSIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17940			Galactose mutarotase-like supe...		Potri.012G045875 [exp]	0	1
					Potri.005G255701 [exp]	7.48	0.8678
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023500 [exp]	8.48	0.8644
AT5G61310			Cytochrome c oxidase subunit V...		Potri.002G195901 [exp]	9.00	0.8738
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.019G125000 [exp]	9.53	0.8570	Pt-XTH9.1
					Potri.001G202501 [exp]	12.12	0.8290
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.014G017701 [exp]	14.31	0.8665
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	17.49	0.8656	Pt-TIP2.7
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.005G076900 [exp]	24.65	0.8378
AT1G05720			selenoprotein family protein (...		Potri.019G112100 [exp]	29.08	0.8534
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.004G058400 [exp]	31.49	0.8246

Compare expression of checked genes

Potri.012G045875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.