Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18240 39 / 0.0009 Ribosomal protein S24/S35, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044100 [exp] 47 / 1e-06 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007968 [exp] 58 / 4e-11 AT1G73770 54 / 2e-09 unknown protein Lus10013498 [exp] 56 / 2e-10 AT1G73770 56 / 5e-10 unknown protein Lus10008778 [exp] 52 / 2e-08 AT3G18240 520 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10022237 [exp] 50 / 8e-08 AT3G18240 513 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G046000.2 pacid=42783949 polypeptide=Potri.012G046000.2.p locus=Potri.012G046000 ID=Potri.012G046000.2.v4.1 annot-version=v4.1 ATGAAGAGAGCTCTACTGACAAATCTCTCTGTCTGCACTCGAAAGCTCCTTCTATCTCCTCCCAGATTAAACCCTAACCCTAGCCCATCACTTGCTCAAC TCACTGTCCCCACTCGTTCTAGACTCAGCAGGTTCTACTCTTCTGAGTCTGACTCATCCTGTGAAGCAATATTTACCCAGACCCAGAAGTCGAATGGCTC CATTGAAGATGCTGATGAGCTCAGCACTCAAGAGATAAAAAGGCTGGTGGAGAAGTACTACGAAGGTGAAGATGAGTCACTACCATTGATTTTCGAAGCA ATTATAAAGAGGAAGCTGGCAGGGATCCCGGATGAGAAGTTGATAGAACAACTTAATCTAGAATCTCCTACAAATGGTTTTGAGGACAAAGAATTTGATT TTGATTTTGAAGATAAATGGAGTGAAACTGATGAGGATGGTGATGACTTAGATTGA
AA sequence Show only first row Show all	>Potri.012G046000.2 pacid=42783949 polypeptide=Potri.012G046000.2.p locus=Potri.012G046000 ID=Potri.012G046000.2.v4.1 annot-version=v4.1 MKRALLTNLSVCTRKLLLSPPRLNPNPSPSLAQLTVPTRSRLSRFYSSESDSSCEAIFTQTQKSNGSIEDADELSTQEIKRLVEKYYEGEDESLPLIFEA IIKRKLAGIPDEKLIEQLNLESPTNGFEDKEFDFDFEDKWSETDEDGDDLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73770			unknown protein		Potri.012G046000 [exp]	0	1
AT1G26740			Ribosomal L32p protein family ...		Potri.008G090100 [exp]	3.16	0.9292
AT2G39440			unknown protein		Potri.012G120220 [exp]	4.47	0.9226
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G138500 [exp]	4.58	0.9323
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.013G094500 [exp]	5.19	0.9429
AT3G44380			Late embryogenesis abundant (L...		Potri.001G218400 [exp]	10.39	0.9240
AT3G59840			unknown protein		Potri.001G146700 [exp]	13.49	0.9007
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Potri.014G140400 [exp]	13.85	0.9403
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	17.05	0.9360
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	17.20	0.9320
					Potri.004G178101 [exp]	17.32	0.9074

Compare expression of checked genes

Potri.012G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.