Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74000 206 / 2e-64 SS3 strictosidine synthase 3 (.1) AT1G74020 202 / 6e-63 SS2 strictosidine synthase 2 (.1) AT1G74010 201 / 2e-62 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 188 / 5e-57 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 167 / 6e-49 SSL3 strictosidine synthase-like 3 (.1) AT3G57010 164 / 1e-47 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 164 / 2e-47 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT5G22020 162 / 1e-46 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 159 / 6e-46 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41290 159 / 1e-45 SSL2 strictosidine synthase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037700 [exp] 434 / 1e-153 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 216 / 7e-68 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 216 / 7e-68 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 191 / 6e-58 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 179 / 1e-53 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.001G214500 [exp] 178 / 8e-53 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.016G037700 [exp] 178 / 1e-52 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.007G130700 [exp] 162 / 9e-47 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 154 / 1e-43 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009646 [exp] 322 / 6e-108 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009014 [exp] 328 / 1e-107 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10009648 [exp] 266 / 1e-87 AT3G57030 192 / 4e-58 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009649 [exp] 219 / 3e-69 AT1G74020 155 / 6e-44 strictosidine synthase 2 (.1) Lus10009015 [exp] 226 / 4e-68 AT3G57030 190 / 6e-54 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009650 [exp] 205 / 7e-64 AT1G74010 156 / 3e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009651 [exp] 194 / 6e-61 AT3G57030 163 / 2e-48 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10013370 [exp] 163 / 2e-47 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10006330 [exp] 159 / 4e-46 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10008451 [exp] 159 / 2e-45 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03088 [poplar] [flax] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Potri.012G046200.2 pacid=42782948 polypeptide=Potri.012G046200.2.p locus=Potri.012G046200 ID=Potri.012G046200.2.v4.1 annot-version=v4.1 ATGGCTATTCCCCCTAGCTCTGCAGTAGCTGTAGTATCAGTACTATCCATTTTTGTCTTCTCTTTTCCTGCTACTGTTCTCTCAGAAACCTTCAGACAAA TTTTCTTGCCCCCACCTGCCTTCGGTCCTGAGTCCATTGCCTTTGAATCTCCTGGCGGAGCATTCTATACTGGTGTTAGTGACGGTCGTATTTTTAAATA TCAACCACTTACTGGGTGGACAGTTTTTGCCTTTACCTCTCCAAACCGGTCTGTAGCGTTTTGTGATGGCACGACCGATCCCAATAAAGGACCTATCTGC GGAAGGCCTTTCGGTTTGGCATACAATAGTTTCACAAGATTGCTCTACATAGCTGATGCATATTATGGACTCCTAGTTGCTGATTCAAATGGAAGGCTTG CTAAACAAATTGCCACTAGTGCTGAAGGGCAACCCTTCGTCTTTCTTAATGCCATAGATATCGACCTAGTAACAGGAAATGTCTATTTTACAGATGCCAG TGCGGTCTATGATCTGAGGAATTCGTCGAAAGCTGCTCAGGTTAAACACTCAACAGCAAGGTCATTGAAATATGACCCGAGAACGAGTCAAGTCACCGTG TTATTGAGAAATCTTTCAAGGGCAGTGGGGCTTGCAGTCAGTCCTGACGGTTCATTTCTCCTTGTCTCAGAGGCTATTGGTAATAGGATTCGAAGATACT GGCTGACAGGACCCAGAGCCAATACTGCAGAAATTTTCTTAAGCAACATTAATGTTGTGAGGCCACAAAACATCAAGAGGACCCCGTCGGGTAGTTTTTG GATAGCAGCTGCAAGTGTTAAGCAAGATTCACAAACATTAGTGTCCATAAGAATTAGGGTTGATGGATCAGGCAGAATTACGGAAATGGCGTCTCTTGAG GGACAATATGGCAGTTGTCACAGGGATAATTTTTCGTCGCAATCTTAA
AA sequence Show only first row Show all	>Potri.012G046200.2 pacid=42782948 polypeptide=Potri.012G046200.2.p locus=Potri.012G046200 ID=Potri.012G046200.2.v4.1 annot-version=v4.1 MAIPPSSAVAVVSVLSIFVFSFPATVLSETFRQIFLPPPAFGPESIAFESPGGAFYTGVSDGRIFKYQPLTGWTVFAFTSPNRSVAFCDGTTDPNKGPIC GRPFGLAYNSFTRLLYIADAYYGLLVADSNGRLAKQIATSAEGQPFVFLNAIDIDLVTGNVYFTDASAVYDLRNSSKAAQVKHSTARSLKYDPRTSQVTV LLRNLSRAVGLAVSPDGSFLLVSEAIGNRIRRYWLTGPRANTAEIFLSNINVVRPQNIKRTPSGSFWIAAASVKQDSQTLVSIRIRVDGSGRITEMASLE GQYGSCHRDNFSSQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74000		SS3	strictosidine synthase 3 (.1)		Potri.012G046200 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.006G157501 [exp]	17.49	1.0000
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011200 [exp]	19.41	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	24.81	1.0000
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	35.65	1.0000
					Potri.006G055550 [exp]	49.47	0.9414
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.009G084200 [exp]	52.49	0.9368
					Potri.001G380550 [exp]	53.35	0.9251
					Potri.010G080666 [exp]	55.96	0.9904
					Potri.001G169351 [exp]	58.17	1.0000
					Potri.001G196900 [exp]	58.78	1.0000

Compare expression of checked genes

Potri.012G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.