Plant FIBer expression Database

Potri.012G046400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06310 330 / 1e-108 ATPOT1B, ATPOT1 protection of telomeres 1b, Nucleic acid-binding, OB-fold-like protein (.1)
AT2G05210 323 / 1e-105 ATPOT1A Protection of Telomeres 1a, Nucleic acid-binding, OB-fold-like protein (.1.2.3)
AT2G04395 76 / 6e-16 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031803
[exp]
305 / 8e-99 AT5G06310 226 / 5e-69 protection of telomeres 1b, Nucleic acid-binding, OB-fold-like protein (.1)
Lus10030151
[exp]
40 / 0.0004 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF02765 POT1 Telomeric single stranded DNA binding POT1/CDC13
Representative CDS sequence
>Potri.012G046400.5 pacid=42784068 polypeptide=Potri.012G046400.5.p locus=Potri.012G046400 ID=Potri.012G046400.5.v4.1 annot-version=v4.1
ATGGGAGAGAGAGACGACTACAAGTTTCTGAAAATAAAAGACGCCATTTCTGCAATCAACCAGAAAGTCAATCTAATCGGCGTTGTTATCGAGCTCGGTT
TCCCCAAAACCACCAGAGGAACCGGCCGGACTTACGGCCGCTACCAGAAAATTATTGTTTTCATGGTTGGCGGGAGATTGATGAACTTCTCAAATTTTTT
TTGTTCAGTGAAAATAGTTGATGAATCATACCCGAAGCCTGGAATTCCGGTCAACTTTTTCATGGCACATATGGAAAATCTGCCTACTGTTGGGTCGCCT
GGAGATATAATTCAACTTTCTCGTGTCGTGATGAAAACTCACAACGATGGTGTCTATGCTCTTTTCAATAAAAAATTTTCTTCTTTTGCGTTATATGAAG
GAAAAAATGGTGAAGACTTCCTACCTTATCAATGTTCATTATTTCGTCCAAGAGACCATGACTCGAAGTTTATAGCAGGCATGAGAAAATGGTTGGTTGA
CTTTCATGTTGATGAAGGAGTAAATACGTTCTCCTTCCTGAGAGAGATGAGGGAAGGACAGCATGCTAATTTGGTTTGCAAGATACTTCATGTTTGTGAG
ATTGCCAAGAATGAGTGGATGGCGCTTGTTTGGGATGGAACAGATTCTCCACCAATCAGCATTAATACAAATCCAGAGCACAAAATGGATGAACAACTTC
CTTTACAGTTGGAACCCTCGCCTCCTTTGTCTAGAGATTTATTACGTACATTTCCTACTGTTGGAACAATATTACGGGTAATCATCGACAAAGTCAATCA
GAAGCATGTTCTCCACCTGCTCAATACAGGTGAATGGGTAAAGTTCATCAGCATACTCTGTGAAGTGCATGCAGGACTGTGGTGTGGTGTGTTGACACCT
TTCACAAAGCTTAGATATTTGTCAAATGAAGACCATTTCGTCTTAGCGTGCCAAAGGTCATACAATGAGCGTTTGTCGCTGAAATTAGGGCGCATCCCAT
ATTGGTGCTTTCCATGGTGTTCACAAATTACAGAGGTTGACTATGACCACATGCCATTTGTTACGTTAATGGATGTTCTCACCTATTCAGAGGCAACTGC
TAGATTCAAGTGCATAATTAGAGTAGTGGCTGCATTTCCATGGCGTGCTGAGGACTTCTCTCATCATGGGACGTACAGAATTAGACTAACCATAGAGGAT
CCAACTGCCAGAATTCATGCTTTCATCTATGCTGAAGATGGGGAGAAATTTTTTGATGGTAACCCGTCGATTGATGTGTTGACAAGGAAGCGAGACAAAT
TGCTTGGAGTGGCTGCAAATAATGATGGCAAGGGAACCAATCCTGCGTCCAGAAATCCACCATGGGTGCAGTGTTGCTTGAAATCCTATTACCTAGACAA
AAATGACATTTGGGGAAGTAGGCAATATAGAATTTTCGGTACCAAGCTTGCGGAAGGAGCTTAA
AA sequence
>Potri.012G046400.5 pacid=42784068 polypeptide=Potri.012G046400.5.p locus=Potri.012G046400 ID=Potri.012G046400.5.v4.1 annot-version=v4.1
MGERDDYKFLKIKDAISAINQKVNLIGVVIELGFPKTTRGTGRTYGRYQKIIVFMVGGRLMNFSNFFCSVKIVDESYPKPGIPVNFFMAHMENLPTVGSP
GDIIQLSRVVMKTHNDGVYALFNKKFSSFALYEGKNGEDFLPYQCSLFRPRDHDSKFIAGMRKWLVDFHVDEGVNTFSFLREMREGQHANLVCKILHVCE
IAKNEWMALVWDGTDSPPISINTNPEHKMDEQLPLQLEPSPPLSRDLLRTFPTVGTILRVIIDKVNQKHVLHLLNTGEWVKFISILCEVHAGLWCGVLTP
FTKLRYLSNEDHFVLACQRSYNERLSLKLGRIPYWCFPWCSQITEVDYDHMPFVTLMDVLTYSEATARFKCIIRVVAAFPWRAEDFSHHGTYRIRLTIED
PTARIHAFIYAEDGEKFFDGNPSIDVLTRKRDKLLGVAANNDGKGTNPASRNPPWVQCCLKSYYLDKNDIWGSRQYRIFGTKLAEGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06310 ATPOT1B, ATPOT1 protection of telomeres 1b, Nu... Potri.012G046400
[exp]
0 1
AT3G56840 FAD-dependent oxidoreductase f... Potri.006G026100
[exp]
4.47 0.5477
AT3G16730 HEB2 hypersensitive to excess boron... Potri.008G219100
[exp]
9.59 0.5870
AT5G59460 scarecrow-like transcription f... Potri.009G033400
[exp]
10.48 0.5335
AT5G19473 RPM1-interacting protein 4 (RI... Potri.009G067600
[exp]
29.39 0.5568
AT2G27080 Late embryogenesis abundant (L... Potri.005G166600
[exp]
38.36 0.5378
AT5G26610 D111/G-patch domain-containing... Potri.013G002100
[exp]
40.62 0.5327
AT5G25360 unknown protein Potri.006G068600
[exp]
52.12 0.5190
AT2G45690 PEX16, SSE1, AT... SHRUNKEN SEED 1, ARABIDOPSIS P... Potri.014G078300
[exp]
53.66 0.4607 Pt-SSE1.1
AT5G39040 AtALS1, ABCB27,... ARABIDOPSIS THALIANA TRANSPORT... Potri.017G097200
[exp]
61.16 0.4403
AT5G66010 RNA-binding (RRM/RBD/RNP motif... Potri.005G101200
[exp]
62.44 0.4951

Potri.012G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.