Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) AT1G70650 222 / 1e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 188 / 1e-50 zinc finger (Ran-binding) family protein (.1) AT5G17790 114 / 2e-26 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT2G17975 68 / 2e-12 zinc finger (Ran-binding) family protein (.1) AT2G26695 57 / 1e-09 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 52 / 9e-08 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 46 / 2e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT1G11800 44 / 0.0002 endonuclease/exonuclease/phosphatase family protein (.1) AT1G67325 42 / 0.0007 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038200 [exp] 592 / 0 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 229 / 2e-67 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G033000 [exp] 181 / 2e-48 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 177 / 6e-47 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 136 / 3e-33 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.018G066900 [exp] 66 / 4e-12 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 63 / 1e-11 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G376900 [exp] 66 / 2e-11 AT1G53460 254 / 3e-83 unknown protein Potri.003G061300 [exp] 55 / 8e-09 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009049 [exp] 386 / 7e-129 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 347 / 5e-114 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 234 / 2e-69 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 165 / 2e-45 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10013630 [exp] 160 / 4e-41 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 156 / 6e-40 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 118 / 1e-27 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 107 / 7e-24 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 68 / 1e-12 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 66 / 4e-12 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.012G046500.7 pacid=42784350 polypeptide=Potri.012G046500.7.p locus=Potri.012G046500 ID=Potri.012G046500.7.v4.1 annot-version=v4.1 ATGACACAAGTATCAGCCGCGTGTGTACCGCAGGTCATCTTCATTCTTCAGTGCTTGCTTGCTGCCATTTTGCCTATCCGAAAACTCTGCGAAACACCAG TCTCCTTTTTCTATCTTCCACCAATGTCATCAGCGTCTAAATTCGTAAACTTTGGCACTTCGCTCTTCCTTCGTACAACTAATAATGGCCATCCCCACAA AACCATCTCCTTTAAACCCCTCCCTTCCCTCCAATTCCACCTCTACTGTTCTTCCTCCACTGCAGCCACAGCCACAGCCACAGCCACCACAGATGATGAT ATCATGGAAACCTTGAACTCCCTTCAACAAGAAAATAAACAAAAACAACATCCATGGCCTGAGTGGGTAACTTTTGTTGATAAATTGAAGACCAGGGGTT ACTTCATGGAAACTTCAGAGGATGAAAATATTATTGCTTACACTGATATGAATCAGTTAAGGGATGGTTGTCTTAGCTTTGCTCGTGACAGATATGATGT TCTCAAATCATTGTCTATACCTGATATTCAAACAGTTGTGGAGAGTGGATGTCCTAATATTCTTCGAAAAGTTGTAAATTCAGCTAAAAGAATGAGAGCT TACGTGCAAAAGGATGAAGGGGATGCTTGTAGTGCTTGTATTCATCGGGGTTGTTGTGATAGAGCTTATGTGGTACTAAAGAGTAATGAAGCAGAGGGTC GTACCATAGACATAGTGCGGGTCTTAATGTTCCATGCACTGGATCCCCTTGTTATTTCAGAAGGAGAGAAATCTCCTGGTAGTGAGCTTATTGAAGCGTC TGCAAGGAAGCTGCTTTCTGAGTTGGTTGAATTGAGTGAGACACCCCATGATCCTGCACTACCAAAGCGTACTCCCAAAACCCCCGATAAGAAGGAGCGA GTTGTGAATTTCACGGGTGGCATACTGCGTGAAAATGTTGAAATGAAGAAAGGAGATTGGATATGTACCAAATGCAACTTTATGAACTTCACTAAAAATA AAAGATGCCGAAAATGTGGTGAACAAAGTGCAAAGAAGGATGGTGATGACTCTATTGAAGTTAAGAAAGGAGATTGGATATGCTCCGAATGCAACTTTAT GAACTTCGCTAAAAATAAAAGATGCCGAAAATGTGGTGAACAAAGTTCAAAGAAGGATGGTGTTGACTCTTTTGAAGTTAAGAAAGGAGATTGGATATGC TCCGAATGCAACTTTATGAACTTCGCTAAAAATAAAAGGTGCCGAAAATGTGGTGAACAAAGTGCAAAGAAGGATGGTGATGACTCTATTGAAGTTAAGA AAGGAGATTGGATATGCTCCGAATGCAACTTTACGAACTTCTCTAAAAATACAAGATGCCGAAAATGTGGTGAACAAAGTGCAAAGAAGGATGGTGATGA CTCTATTGAAGTTAAGAAAGGAGATTGGATATGCTCCGAGTGTGAATTCTTGAATTTTTCTAGAAATATAAAATGCCTAAAGTGCAAAGCAGATGGCCCA GAGAGGGTCGCCGTAGATAATGTGGAAATGAAGAGGGGGGATTGGAATTGTACCAAGTGTGGGTTCATGAATTTTGCTAGCAATAAGACATGCTTGCGTT GTCTAGATCCACGCCCTGAAAGAGACACTGGAGAGTGGAACTGCCCATCGTGTGACTTCTTAAATTTCACTAAGAATAAAGTCTGCTTAAAGTGCAATTG TGACCGCCCCAAAAGAATGGGTGGAGAGTGGCACTGCCCATCGTGTGACTTCATGAATTTCAGTAGGAATGCAGTCTGCCTAAAGTGCGATTGTAAGCGT CCCAGAGAAGCGATGACCGAGTATGAAGAACAGATTTGGAAGAGCCCTTATTAA
AA sequence Show only first row Show all	>Potri.012G046500.7 pacid=42784350 polypeptide=Potri.012G046500.7.p locus=Potri.012G046500 ID=Potri.012G046500.7.v4.1 annot-version=v4.1 MTQVSAACVPQVIFILQCLLAAILPIRKLCETPVSFFYLPPMSSASKFVNFGTSLFLRTTNNGHPHKTISFKPLPSLQFHLYCSSSTAATATATATTDDD IMETLNSLQQENKQKQHPWPEWVTFVDKLKTRGYFMETSEDENIIAYTDMNQLRDGCLSFARDRYDVLKSLSIPDIQTVVESGCPNILRKVVNSAKRMRA YVQKDEGDACSACIHRGCCDRAYVVLKSNEAEGRTIDIVRVLMFHALDPLVISEGEKSPGSELIEASARKLLSELVELSETPHDPALPKRTPKTPDKKER VVNFTGGILRENVEMKKGDWICTKCNFMNFTKNKRCRKCGEQSAKKDGDDSIEVKKGDWICSECNFMNFAKNKRCRKCGEQSSKKDGVDSFEVKKGDWIC SECNFMNFAKNKRCRKCGEQSAKKDGDDSIEVKKGDWICSECNFTNFSKNTRCRKCGEQSAKKDGDDSIEVKKGDWICSECEFLNFSRNIKCLKCKADGP ERVAVDNVEMKRGDWNCTKCGFMNFASNKTCLRCLDPRPERDTGEWNCPSCDFLNFTKNKVCLKCNCDRPKRMGGEWHCPSCDFMNFSRNAVCLKCDCKR PREAMTEYEEQIWKSPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48570			zinc finger (Ran-binding) fami...		Potri.012G046500 [exp]	0	1
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.010G167400 [exp]	4.47	0.9413
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	4.79	0.9479
AT3G57990			unknown protein		Potri.001G145400 [exp]	9.38	0.9433
AT2G38660			Amino acid dehydrogenase famil...		Potri.006G114100 [exp]	12.00	0.9311
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G025100 [exp]	13.96	0.9414
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	20.44	0.9295
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	23.97	0.9404
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.014G117700 [exp]	26.98	0.9289
AT5G48545		HINT3	histidine triad nucleotide-bin...		Potri.002G248800 [exp]	31.08	0.9365
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	37.41	0.9342

Compare expression of checked genes

Potri.012G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.