Plant FIBer expression Database

Potri.012G046600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42150 407 / 2e-143 Glutathione S-transferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G038300
[exp]
556 / 0 AT5G42150 387 / 1e-135 Glutathione S-transferase family protein (.1)
Potri.005G242500
[exp]
407 / 2e-143 AT5G42150 458 / 1e-163 Glutathione S-transferase family protein (.1)
Potri.012G082800
[exp]
40 / 0.0002 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Potri.015G078900
[exp]
40 / 0.0005 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013568
[exp]
406 / 9e-143 AT5G42150 459 / 8e-164 Glutathione S-transferase family protein (.1)
Lus10017275
[exp]
405 / 2e-142 AT5G42150 454 / 9e-162 Glutathione S-transferase family protein (.1)
Lus10028510
[exp]
41 / 0.0009 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF13417 GST_N_3 Glutathione S-transferase, N-terminal domain
CL0497 GST_C PF14497 GST_C_3 Glutathione S-transferase, C-terminal domain
Representative CDS sequence
>Potri.012G046600.1 pacid=42782981 polypeptide=Potri.012G046600.1.p locus=Potri.012G046600 ID=Potri.012G046600.1.v4.1 annot-version=v4.1
ATGAGAAGAGCGTCCACTCTCGCCTCTTCCGTCCTCTCTCGGACCCTCACCCCCACCCTCCACGAAGGCGGTGCCCTCTCCACCATCAACCACCGTTTCC
TCCTTGTTGCACTCTACAGCACCACCAGCAATACCGGCAGTTCCCACAGTCGCCGGATCTTCAACCCATTCTCCTCGTCTCTCGGTGTCGCCGGGGCCTT
AGTCTCCGCCGCTGCCGCTGCATCTCTCTCTCAAGACGTCCTCGCCAAGGAGCCACCACGGGCCGAGCTCGTGCCTAAGGAAGTTGTTCTATATCAGTAC
GAGGCCTGTCCTTTTTGCAATAAAGTTAAAGCTTATTTGGATTACTATGATATACCATACAAAGTAGTGGAAGTGAATCCAATTAGTAAGAAAGAGATCA
AATGGTCTGATTATAAGAAGGTTCCTATATTGACGGTGGATGGAGAACAGCTTGTCGACTCTTCAGCCATCATTGATAAGTTGAGAAACAAGATACATGG
TAAGGAAATTGTAGAATCTGCTTCTGATAAGGATGATGATGAAGAGATAAAGTGGCGGAGGTGGGTTGACAATCACTTGGTACATGTCTTGTCTCCAAAC
ATTTATCGCAATACTTCTGAGGCTCTTGAATCCTTCGACTATATCACAAGCAATGGTAATTTTAGCTTTACAGAGAAAATCACCGTCAAGTATGCTGGAG
CTGCTGCAATGTATTTTGTGTCAAAGAAATTGAAGAAGAAATATAACATTACTGATGAACGTGCTGCCCTGTATGAAGCTGCGGAAACATGGGTGGATGC
TCTGAATGGCCGAGAGTTTCTTGGGGGGTCAAAGCCTAATTTAGCTGACCTTGCTGTTTTTGGGGTGTTGAGACCCATCCGCTATCTGAGGTCTGGTAGA
GATATGGTGGAGCAAACTCGAATAGGAGATTGGTATACAAGAATGGAGAACGCTGTGGGGGAATCCGCAAGGATAAAGGCTTAG
AA sequence
>Potri.012G046600.1 pacid=42782981 polypeptide=Potri.012G046600.1.p locus=Potri.012G046600 ID=Potri.012G046600.1.v4.1 annot-version=v4.1
MRRASTLASSVLSRTLTPTLHEGGALSTINHRFLLVALYSTTSNTGSSHSRRIFNPFSSSLGVAGALVSAAAAASLSQDVLAKEPPRAELVPKEVVLYQY
EACPFCNKVKAYLDYYDIPYKVVEVNPISKKEIKWSDYKKVPILTVDGEQLVDSSAIIDKLRNKIHGKEIVESASDKDDDEEIKWRRWVDNHLVHVLSPN
IYRNTSEALESFDYITSNGNFSFTEKITVKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGR
DMVEQTRIGDWYTRMENAVGESARIKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42150 Glutathione S-transferase fami... Potri.012G046600
[exp]
0 1
AT4G35510 unknown protein Potri.005G102000
[exp]
2.44 0.7842
AT4G03240 ATFH, FH frataxin homolog (.1) Potri.013G150400
[exp]
7.61 0.8134
AT4G17960 unknown protein Potri.001G143600
[exp]
8.66 0.7764
AT4G15410 PUX5, ATB' GAMM... serine/threonine protein phosp... Potri.002G225800
[exp]
9.79 0.7596
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.004G118900
[exp]
14.28 0.6996
AT1G17530 ATTIM23-1 translocase of inner mitochond... Potri.001G198100
[exp]
18.49 0.6954 ATTIM23.2
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Potri.010G084800
[exp]
18.97 0.7480 PBD2.2
AT3G06610 DNA-binding enhancer protein-r... Potri.008G105000
[exp]
23.21 0.7550
AT1G26830 CUL3A, ATCUL3A,... cullin 3A, cullin 3 (.1) Potri.008G148300
[exp]
23.32 0.6549 CUL3.1
AT2G27470 CCAAT NF-YB11 "nuclear factor Y, subunit B11... Potri.009G163500
[exp]
27.23 0.6653

Potri.012G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.