Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1) AT1G21150 163 / 2e-46 Mitochondrial transcription termination factor family protein (.1) AT1G61970 139 / 4e-37 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 138 / 6e-37 Mitochondrial transcription termination factor family protein (.1) AT1G61980 138 / 7e-37 Mitochondrial transcription termination factor family protein (.1) AT3G46950 136 / 8e-36 Mitochondrial transcription termination factor family protein (.1) AT5G64950 134 / 2e-35 Mitochondrial transcription termination factor family protein (.1) AT1G62120 126 / 3e-32 Mitochondrial transcription termination factor family protein (.1) AT1G62085 123 / 4e-31 Mitochondrial transcription termination factor family protein (.1) AT1G62110 117 / 5e-29 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046700 [exp] 428 / 1e-149 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 412 / 4e-143 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 397 / 3e-137 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 288 / 1e-94 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 278 / 2e-90 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 274 / 6e-89 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 272 / 4e-88 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 271 / 5e-88 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 268 / 1e-86 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004957 [exp] 227 / 9e-71 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 220 / 4e-68 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 211 / 1e-64 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 210 / 4e-64 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 194 / 9e-58 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 177 / 5e-52 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 136 / 3e-37 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 135 / 6e-37 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 131 / 1e-35 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 131 / 2e-34 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.012G046800.1 pacid=42782819 polypeptide=Potri.012G046800.1.p locus=Potri.012G046800 ID=Potri.012G046800.1.v4.1 annot-version=v4.1 ATGTTTTATTTTCTCTGCAAAACCATTCTCCACCATGGGAGTGGGAGACAAACTACGGCTACTACACTCATGCTAAAACACAAACATTATTTGCTTCAAA ACCTGTTTATGAATGCCAGATGTGTCTCCAGTGATGCAAATCCAAATCAACAATCATTCCCAGTCTCTTACCTCATAAATAAATGTGGGTTCTCTCTAGG ATCTGCTCTATCAGCTTCTAAACGTCTCACTTTTGAAATCCCAGATCAACCTGACGCAGTGATTCACATGTTCAAGCGCTATGGTTTTTGTGATGCCGAT ATCTTTAGACTAATTAAAAGATATCCACGAGTCCTTTCGTGCAATCCTGACAAAACCCTCTTGCCAAGACTCGAGTTTTTTTATTCTAAAGGCATGTCAA ACACTGATATTGCCCACATTTTATGCGGATGCCCTCTTCTTTTAGGCAGAAGCTTGCAAAATCATGTAACTCCTAATTTCAATTTACTTAGTGATCTGCT TCTATCCGACAACAAAGTCATTTCTGCTGCCAGAAACGACCCGTTTATTCTATTTCGTCACGGTGACAGATATTTGAAACCTTTTATCAACCTTTTGCAA GATCATGGAGTTCCCAGAACACAGATTGCGTCCTTAATTTGCAACTGGCCTAGGTCTATCGGTGTATGCCTAAATCATTTCAGAAAGTGCGTCGAGGAAG TTAGAGAAAAGGGTTATGATCCTTCTAGTGCAGAGTTTATTAGAGCAGTGGTGGTATTGAGTCAATTGGGAAAATCTGGGTGGGAAAGAAAGGCTGTTGT TTATAAGAGTTGGGGTTGGTCTGAGAAAGACATTCTTGTTGCTTTCAGAAAGAACCCGTGGAGCTTGATGACATCGGAGAGTAAGATTATGGCAGTGATG AAATTTTTCGTTGAGAAAATGGATTGTGAGTCTTTATATCTTGCAAAACACCCAAATCTTTTGATGTATAGCTTGGAGAAGAGACTCATACCAAGGGCTT TGGTTCTTCATTTTCTGTTAAGGAATAAGTTGATTGACAAGAAGCCTAACTTGAATACTTTGTTTGTGTATTCTGAGAAGTTGTTCCTTGAGAAGTTCGT GAATTGTTTTGATGAAGCCCCCCAGCTATTAAAGCTATATAGAGATCAATCAGATCTTGCAAAATGA
AA sequence Show only first row Show all	>Potri.012G046800.1 pacid=42782819 polypeptide=Potri.012G046800.1.p locus=Potri.012G046800 ID=Potri.012G046800.1.v4.1 annot-version=v4.1 MFYFLCKTILHHGSGRQTTATTLMLKHKHYLLQNLFMNARCVSSDANPNQQSFPVSYLINKCGFSLGSALSASKRLTFEIPDQPDAVIHMFKRYGFCDAD IFRLIKRYPRVLSCNPDKTLLPRLEFFYSKGMSNTDIAHILCGCPLLLGRSLQNHVTPNFNLLSDLLLSDNKVISAARNDPFILFRHGDRYLKPFINLLQ DHGVPRTQIASLICNWPRSIGVCLNHFRKCVEEVREKGYDPSSAEFIRAVVVLSQLGKSGWERKAVVYKSWGWSEKDILVAFRKNPWSLMTSESKIMAVM KFFVEKMDCESLYLAKHPNLLMYSLEKRLIPRALVLHFLLRNKLIDKKPNLNTLFVYSEKLFLEKFVNCFDEAPQLLKLYRDQSDLAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.012G046800 [exp]	0	1
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	2.44	0.8216
AT5G07900			Mitochondrial transcription te...		Potri.003G190300 [exp]	6.92	0.7712
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	7.93	0.7856
AT5G14050			Transducin/WD40 repeat-like su...		Potri.005G218600 [exp]	8.06	0.7723
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	8.94	0.7776
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.001G155200 [exp]	9.38	0.7635	Pt-HOS1.2
AT5G09270			unknown protein		Potri.007G102600 [exp]	15.49	0.7498
AT1G15420			unknown protein		Potri.001G173300 [exp]	17.14	0.7720
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	19.89	0.7569
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	22.22	0.7567

Compare expression of checked genes

Potri.012G046800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.