Plant FIBer expression Database

Potri.012G047000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48580 261 / 2e-82 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009051
[exp]
227 / 1e-69 AT1G48580 204 / 6e-61 unknown protein
Lus10009683
[exp]
225 / 1e-64 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF15072 DUF4539 Domain of unknown function (DUF4539)
Representative CDS sequence
>Potri.012G047000.2 pacid=42783255 polypeptide=Potri.012G047000.2.p locus=Potri.012G047000 ID=Potri.012G047000.2.v4.1 annot-version=v4.1
ATGGACACTCCGTGGGAAGAGGCACTAGACCTAAAAGACTCGTCGGACTCAGACTCAGACCTCCCTCCTCTCCGCCCTCTCAAACGCCATCAGAATTTCA
CCCCCTCCACCGCCACTACCGGTGGAACTGGTGGACCTAACCACACTCTCTCCCAACCATTTCTTGGCCGCTGCTCTCAGAACACCCAAAACAACCCACC
ACCACCAACAACCACTTACTCCAAAATCCCGGGCCCTGCTGGAACCGTACAAGCTGCCATGCACCGCCGCAAGAGTCAAATTAATGAACATCTGATGGAA
GAAGAAGAACCAATCCCTACTCAAGAGTACATTAGAAGGGCTGTGGAGGATAGTGGTTGTGCTGAAGATGACGATTTTACGCGTGATGCTTGGCTCTCTG
CCGTTGATTTTGTTCGTCATCAAGGTTTGGTGGTGGATGGTGATGGTGCAATTGGGATCCCTTTGAGTGTGATAAAGAGATGGGCTAGTTTTGATAGAGT
GGCTCAGGTTGTTGCCATTGTTAAATCATGTAGACCAAATGGCCTTGGTGATATGATGGTGACTCTAAAGGATCCCACGGGTACAATTGATGCTAGCATT
CATCACAAAGTCCTCGCTGAGGGAGATTTTGGAAAGGACATATCTATTGGAGCTGTGATGATAGTCCAAAAGGTTGCAGTTTTTTGTCCTACACGTTTAG
CACGTTATCTCAACATAACACTTAGTAACATGGTCAAGGTCATCACTAAGGATGGCAGAGCTTCACCAGAACAAAATTGTTCTGCTCGTGATTTAACAGT
AAAAAATGCTGCTGTAGTTTCTGATATCACAGGACAGGGTGAAAGATCACAGATGACACAAAATCTATCGTTGTCACAAGGAAGAACTGAAGGAATCATG
AATAGTCTGAGACAACATGCTATGGCAGTTGCGTGCATTGATGAACAGATGGAAGAAGATGCACCGATAAGAAGCAGATGTCATAGCATTGGAAACAACA
GAAATGAAAATGCTCTTCCAATGGAAGATCATTTATTGGCGAGACAGGATTTGGATAGTGGCAGAAGAGAAAGGGCTGTTGAACCAGACACCAGTGACAA
TGACAAGGGATCTGTGACAAGTGAGAAGCTAAACAATTACAGCAAAGCAGGCATAGACCATATATTGGAAGGTACTGAATATGGTACTGCTGCAGCAGAC
TCAGTTGGTGCCCTTGACCACCAAGAAAAGAGGAATTATAACGGAACTGAAGATGGACAACCACCAACTTCAAGAGCCGCACTACCGCAATGGACAGATG
AACAGCTGGAGGAGCTTTTTGCATTTGATTGA
AA sequence
>Potri.012G047000.2 pacid=42783255 polypeptide=Potri.012G047000.2.p locus=Potri.012G047000 ID=Potri.012G047000.2.v4.1 annot-version=v4.1
MDTPWEEALDLKDSSDSDSDLPPLRPLKRHQNFTPSTATTGGTGGPNHTLSQPFLGRCSQNTQNNPPPPTTTYSKIPGPAGTVQAAMHRRKSQINEHLME
EEEPIPTQEYIRRAVEDSGCAEDDDFTRDAWLSAVDFVRHQGLVVDGDGAIGIPLSVIKRWASFDRVAQVVAIVKSCRPNGLGDMMVTLKDPTGTIDASI
HHKVLAEGDFGKDISIGAVMIVQKVAVFCPTRLARYLNITLSNMVKVITKDGRASPEQNCSARDLTVKNAAVVSDITGQGERSQMTQNLSLSQGRTEGIM
NSLRQHAMAVACIDEQMEEDAPIRSRCHSIGNNRNENALPMEDHLLARQDLDSGRRERAVEPDTSDNDKGSVTSEKLNNYSKAGIDHILEGTEYGTAAAD
SVGALDHQEKRNYNGTEDGQPPTSRAALPQWTDEQLEELFAFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48580 unknown protein Potri.012G047000
[exp]
0 1
AT5G37930 Protein with RING/U-box and TR... Potri.017G122800
[exp]
5.29 0.8643
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.006G188700
[exp]
11.48 0.8614
AT5G54970 unknown protein Potri.006G052300
[exp]
14.49 0.8298
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
19.67 0.8569 SYN3.1
AT2G37960 unknown protein Potri.006G094600
[exp]
22.09 0.8514
AT2G01120 ORC4, ATORC4 origin recognition complex sub... Potri.008G126300
[exp]
25.19 0.8504
AT1G07270 Cell division control, Cdc6 (.... Potri.001G250200
[exp]
26.83 0.8369
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
30.88 0.8437
AT2G43360 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUX... Potri.017G033300
[exp]
38.53 0.7998 Pt-BIO2.2
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
38.65 0.8356

Potri.012G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.