Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 251 / 2e-86 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 242 / 4e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT5G37740 233 / 2e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G73580 228 / 2e-77 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 216 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 215 / 2e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 202 / 4e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70800 202 / 4e-67 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 198 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G23140 193 / 8e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125500 [exp] 243 / 1e-83 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 235 / 2e-80 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G131500 [exp] 228 / 2e-77 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 222 / 4e-75 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.011G098500 [exp] 152 / 2e-45 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 143 / 4e-42 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.006G004600 [exp] 134 / 2e-40 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 133 / 4e-40 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 139 / 2e-39 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009053 [exp] 260 / 7e-89 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 258 / 2e-88 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 242 / 2e-82 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10033585 [exp] 239 / 6e-82 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 237 / 5e-81 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018005 [exp] 223 / 5e-75 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10021775 [exp] 191 / 2e-62 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 160 / 4e-51 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10001594 [exp] 159 / 6e-50 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038539 [exp] 142 / 1e-41 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G047100.1 pacid=42783883 polypeptide=Potri.012G047100.1.p locus=Potri.012G047100 ID=Potri.012G047100.1.v4.1 annot-version=v4.1 ATGGAGAGCATTTTGGGTTTGCTCAGAATTCGTGTCAAACGTGGTATAAACCTTGCTGTACGTGATGTTCGTAGCAGCGATCCTTATGTTGTCATCAGGA TGGGCAATCAGAAACTGAAAACTCGTGTGATCAAGAAGGACGTTAACCCACACTGGAATGAAGATTTAACTCTTTCTGTTACAGATCCTAATCTTCCAGT CAAGCTGATCGTCTACGACCATGACTTGTTTACCAAAGACGATAAAATGGGAGAGGCAGAGTTTGATATTAGGCCATTCATAGAGACCTTGAAGATGAAC TTGGCAGGGGTTTCAAGTGGCACTGTCATCACAAGAATACAACCGAGCCGGCAAAATTGCTTATCTGAGGATAGCTGCATTATTTATAGTGATGGCAAGG TTGTTCAAGATCTCTACCTCAGATTAAAAAATGTGGAATGTGGTGAATTGGAAATCCAACTCCAATGGATTACCTTCCCTAGCTCGAGGGGCTTTTAA
AA sequence Show only first row Show all	>Potri.012G047100.1 pacid=42783883 polypeptide=Potri.012G047100.1.p locus=Potri.012G047100 ID=Potri.012G047100.1.v4.1 annot-version=v4.1 MESILGLLRIRVKRGINLAVRDVRSSDPYVVIRMGNQKLKTRVIKKDVNPHWNEDLTLSVTDPNLPVKLIVYDHDLFTKDDKMGEAEFDIRPFIETLKMN LAGVSSGTVITRIQPSRQNCLSEDSCIIYSDGKVVQDLYLRLKNVECGELEIQLQWITFPSSRGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.012G047100 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	3.87	0.8291
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	9.79	0.8237
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133800 [exp]	11.83	0.7795
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.011G071100 [exp]	14.21	0.8253
AT1G14370		Kin1, PBL2, APK...	PBS1-like 2, kinase 1, protein...		Potri.009G020700 [exp]	15.65	0.8219
					Potri.009G055800 [exp]	16.70	0.8251
AT2G38905			Low temperature and salt respo...		Potri.010G217200 [exp]	19.89	0.7942
AT5G49525			unknown protein		Potri.010G148300 [exp]	22.91	0.7813
					Potri.002G091600 [exp]	24.81	0.8082
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	27.05	0.7928

Compare expression of checked genes

Potri.012G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.