Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PIN7,Pt-PIN1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 855 / 0 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT2G01420 773 / 0 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 766 / 0 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G23080 761 / 0 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT5G57090 730 / 0 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 541 / 0 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 203 / 2e-59 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 187 / 1e-53 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038700 [exp] 1128 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 833 / 0 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 828 / 0 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 818 / 0 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 817 / 0 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 748 / 0 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 526 / 0 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 520 / 3e-180 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 332 / 2e-106 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009054 [exp] 893 / 0 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 681 / 0 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 679 / 0 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 578 / 0 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 565 / 0 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 427 / 1e-145 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018006 [exp] 361 / 9e-123 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 311 / 8e-104 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 303 / 8e-101 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 293 / 8e-97 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.012G047200.6 pacid=42784028 polypeptide=Potri.012G047200.6.p locus=Potri.012G047200 ID=Potri.012G047200.6.v4.1 annot-version=v4.1 ATGATTAGTTTACTAGATTTCTACCATGTGATGACTGCAATGGTGCCACTTTACGTGGCCATGATTTTGGCCTATGGCTCGGTGAAATGGTGGAAGATTT TCACTCCTGATCAGTGCTCGGGCATCAACCGTTTTGTGGCGCTTTTTGCTGTCCCTCTCCTCTCTTTCCACTTCATATCTACTAATGATCCTTACAAAAT GAACTTTCGCTTCATAGCTGCTGATACTCTACAAAAGATCATAGTTTTAGTAGTATTAGCATTTTGGACTATGTTTAGTAAAAGGGGTTGCTTGGAATGG ACCATTACATTGTTTTCACTTTCAACACTGCCCAACACTCTTGTTATGGGCATTCCTTTGCTCAAAGGAATGTATGGTGATTATTCTGGTAGTTTAATGG TGCAAGTTGTGGTCCTTCAATGCATCATTTGGTACACTTTGATGCTGTTTCTGTTTGAATATAGGGGTGCTAAACTGCTCATCTCTGAGCAATTTCCAGA CACTGCTGGTTCCATTGTGTCAATCCATGTAGACTCTGATATCATGTCACTTGATGGTAGACAGCCTCTAGAAACTGAAGCAGAGATCAAAGAAGATGGA AAGTTACATGTCACTGTTAGGAAATCCAATGCTTCAAGATCGGATATTTTCTCTAGAAGGTCTCAAGGTCTATCATCAACAACACCAAGGCCATCAAACC TTACCAATGCTGAGATTTACTCCTTACAATCATCAAGAAATCCAACTCCGAGAGGGTCTAGTTTCAATCACACGGATTTCTACTCAATGATGGCGGCTGG TAGAAACTCAAATTTTGGTGCTTCAGATGTTTATGGACTATCAGCATCTCGGGGCCCAACACCGAGGCCATCCAATTTTGAAGAAGAGAATGGTGGAAGT AACAAACCAAGGTTCCATTACCACGCGCCAGGTGGTGCAACTCATTATCCAGCACCAAACCCTGGCATGTTTTCGCCAACAACTGCATCTAAAGGTGTTG CAGCAAATGCCAATAATGCTGCTGCAAAGAAACCTAATGGGCAAGCTCAACAGAAAGCTGAAGATGGTAGGGACCTTCATATGTTTGTTTGGAGTTCAAG TGCTTCTCCTGTTTCAGATGTTTTCGGTGGTCATGATTATGGTGCCCATGACCAGAAAGATGTTAGGCTCGCTGTATCTCCTGGAAAAGTTTCAGTTGAG GGGCATACAGAGAATCAGGAAGACTATAATTTAGAGAGAGATGGTTTTAGCTTTGGAAATAGAGGAATGGACAGAGAAATGAATAACCCTGAAGGTGAGA AAGTTGGTGCTGCAGGCAAACCAAAACCAATGCCCCCAACAAGTGTCATGACAAGGCTTATACTCATCATGGTCTGGAGGAAACTTATCAGAAACCCCAA CACTTACTCCAGCTTAATTGGTCTCACCTGGTCCTTGGTTTCTTTCAGGTGGGATGTACAGATGCCTGCGATTATAGCTAAGTCCATTTCCATTCTGTCA GATGCAGGGCTCGGCATGGCAATGTTCAGTCTCGGTCTGTTTATGGCTTTGCAACCAAGGATCATAGCATGTGGGAATTCCGTCGCAGCTTTTGCTATGG CTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCTATTGCTGTTGGTCTAAGAGGCACGCTCTTACACATTGCCATCGTTCAGGCAGCTCT ACCACAAGGAATTGTCCCCTTTGTCTTTGCCAAGGAGTACAACGTGCATCCTGATATTCTCAGTACAGCTGTCATATTTGGGATGCTAATTGCATTGCCC ATAACTCTTGTGTACTACATCTTAATGGGGCTATGA
AA sequence Show only first row Show all	>Potri.012G047200.6 pacid=42784028 polypeptide=Potri.012G047200.6.p locus=Potri.012G047200 ID=Potri.012G047200.6.v4.1 annot-version=v4.1 MISLLDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYKMNFRFIAADTLQKIIVLVVLAFWTMFSKRGCLEW TITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQVVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDG KLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRNSNFGASDVYGLSASRGPTPRPSNFEEENGGS NKPRFHYHAPGGATHYPAPNPGMFSPTTASKGVAANANNAAAKKPNGQAQQKAEDGRDLHMFVWSSSASPVSDVFGGHDYGAHDQKDVRLAVSPGKVSVE GHTENQEDYNLERDGFSFGNRGMDREMNNPEGEKVGAAGKPKPMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWDVQMPAIIAKSISILS DAGLGMAMFSLGLFMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGTLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALP ITLVYYILMGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	0	1	PIN7,Pt-PIN1.2
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	5.47	0.7395
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	8.00	0.7079
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	10.81	0.7463	PIN1,PIN1.3
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.003G004000 [exp]	11.83	0.7131
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	12.64	0.6591
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	13.03	0.7260
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	15.19	0.6998
AT2G17990			unknown protein		Potri.007G012600 [exp]	15.87	0.7056
AT5G05950		MEE60	maternal effect embryo arrest ...		Potri.010G196100 [exp]	17.66	0.6178
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	18.33	0.6425

Compare expression of checked genes

Potri.012G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.