Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48600 862 / 0 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 861 / 0 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 852 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 74 / 5e-14 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 71 / 3e-13 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 61 / 7e-10 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 56 / 4e-08 SMT3 sterol methyltransferase 3 (.1) AT4G33110 54 / 9e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 49 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 44 / 0.0002 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039000 [exp] 967 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047301 [exp] 244 / 3e-79 AT1G48600 213 / 8e-68 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 81 / 1e-16 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 74 / 3e-14 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 71 / 5e-13 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.005G245800 [exp] 66 / 2e-11 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 64 / 7e-11 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 56 / 2e-08 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.018G060000 [exp] 52 / 7e-07 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042006 [exp] 878 / 0 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 877 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 874 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 813 / 0 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009537 [exp] 76 / 1e-14 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 75 / 1e-14 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10022684 [exp] 61 / 1e-09 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10005625 [exp] 58 / 7e-09 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 57 / 9e-09 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029124 [exp] 54 / 1e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] NADP_Rossmann PF13489 [poplar] [flax] Methyltransf_23 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.012G047400.2 pacid=42783254 polypeptide=Potri.012G047400.2.p locus=Potri.012G047400 ID=Potri.012G047400.2.v4.1 annot-version=v4.1 ATGGCTGCTCATGTGGAAGAACGCGAGATTCAAAAGAAGTATTGGATGGATAACATTTCTGATTTGAGTGTGAATGCGATGATGCTTGACTCCAAAGCAT CTGAACTTGACAAGGAAGAAAGACCTGAGATACTTTCTCTGCTTCCACCATATGAAGGAAAAACAGTTTTGGAACTTGGAGCTGGTATTGGCCGCTTCAC TGGGGAATTGGCACAGAAGGCCAGCCAAGTTGTGGCTCTGGACTTCATTGAGAGTGCCATAAAAAAGAATGAAAATATTAATGGACACTATAAGAATGTC AAGTTTATGTGCGCTGATGTGACATCCCCAGATCTGAATTTTTCAGAGGGATCAGTGGATTTGATATTCTCAAATTGGCTTCTCATGTATCTTTCCGACA AGGAGGTGGAGAATCTGGTTGAAAGGATGGTCAAATGGCTAAAGGTTGGGGGGTTCATTTTCTTTAGAGAGTCTTGTTTTCATCAATCTGGAGATTCCAA GCGAAAATACAACCCAACCCACTACCGTGAACCCAGATTCTACACAAAGGTGTTTAAAGAATGCCATACATTTGATGGGTCTGGAAATTCTTTTGAGCTT TCTCTAATTGGCTGCAAATGCATTTCAGCTTATGTGAAAAACAAAAAGAACCAGAATCAGATTTGTTGGATATGGCAGAAAGTCAGTTCAAATGATGATA AGGGGTTCCAGCGATTCTTAGATAATGTCCAATATAAATCTAATGGCATATTACGTTATGAGCGCGTCTTTGGTCAAGGTTTTGTGAGCACAGGAGGAAT GGAGACAACTAAAGAATTTGTGGAAAAGCTGGATCTTAAGCCTGGCCAGAAAGTCCTAGATGTTGGCTGTGGGATTGGGGGAGGTGACTTTTACATGGCT GAGAACTTTGAAGTGGAGGTTGTAGGCATTGACCTCTCCGTAAATATGATTTCATTTGCTCTCGAACGTGCCATTGGACTCAAATGCTCTGTTGAGTTTG AAGTTGCTGATTGCACTACGAAGACATATCCTGACAATACTTTTGATGTTATCTACAGCCGGGACACCATTTTGCACATTCAAGACAAACCTGCATTATT TAGATCTTTCTTCAAGTGGCTGAAGCCTGGAGGTAAAGTACTTATCAGTGATTACTGCAAGTGTGCTGGAACTCCATCACCAGAATTTGCAGAGTACATT AAACAGAGAGGATATGATCTTCATGATGTGAAAGCATATGGCCAGATGCTTAGGGATGCTGGTTTTGATGAGGTCATTGCAGAAGACCGAACTGATCAGT TCAACCAAGTTCTGCTAAGGGAATTAAAAGCTATAGAAAAGGAGAAGGATGAATTTATCCATGACTTCTCTGAAGAAGACTATAATGATATAGTTGGTGG ATGGAAGGCAAAGCTGATCAGGAGTTCATCTGGCGAGCAGCGATGGGGCCTGTTCATTGCCAAGAAAAAATGA
AA sequence Show only first row Show all	>Potri.012G047400.2 pacid=42783254 polypeptide=Potri.012G047400.2.p locus=Potri.012G047400 ID=Potri.012G047400.2.v4.1 annot-version=v4.1 MAAHVEEREIQKKYWMDNISDLSVNAMMLDSKASELDKEERPEILSLLPPYEGKTVLELGAGIGRFTGELAQKASQVVALDFIESAIKKNENINGHYKNV KFMCADVTSPDLNFSEGSVDLIFSNWLLMYLSDKEVENLVERMVKWLKVGGFIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHTFDGSGNSFEL SLIGCKCISAYVKNKKNQNQICWIWQKVSSNDDKGFQRFLDNVQYKSNGILRYERVFGQGFVSTGGMETTKEFVEKLDLKPGQKVLDVGCGIGGGDFYMA ENFEVEVVGIDLSVNMISFALERAIGLKCSVEFEVADCTTKTYPDNTFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCKCAGTPSPEFAEYI KQRGYDLHDVKAYGQMLRDAGFDEVIAEDRTDQFNQVLLRELKAIEKEKDEFIHDFSEEDYNDIVGGWKAKLIRSSSGEQRWGLFIAKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047400 [exp]	0	1
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.008G052900 [exp]	16.61	0.6728
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	20.09	0.7525
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.018G005300 [exp]	23.15	0.8011
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047301 [exp]	24.24	0.6679
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.003G050700 [exp]	24.55	0.7373
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	52.23	0.6902
AT1G26770		ATHEXPALPHA1.1,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.017G085300 [exp]	56.52	0.7266	PtEXPA9,EXP2.7
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	64.42	0.7139
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	69.32	0.6426
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	73.36	0.7225	SAG13.4

Compare expression of checked genes

Potri.012G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.