Plant FIBer expression Database

Potri.012G048001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G048001.1 pacid=42783657 polypeptide=Potri.012G048001.1.p locus=Potri.012G048001 ID=Potri.012G048001.1.v4.1 annot-version=v4.1
ATGCCTAGTGTTAGAGACCGACCAGCCAGTTTCAACGATGGCTCCGGTAGCAACAAGCTCATAAACAGCAAGAGATGCCACTCATGGTTTGTGTCGACAG
GAGCCTCCGCTGTAATGGAGCTGGCCATCTTTATTGTCAGCTGTTTCCCCTCAGGAAATAATGGGGCTATGGTGAAAGCGGGACAGAGAAGCACGAGTAA
CCATGTCTTCACCTTCGAATACAGTGTGCTTTTTCCCTGTGTATGCAGATTCTTTTCCTATCATGTCTCGTTTCTCAATGTTTCAGCCCTTTTGGGGGGG
GGGACACAATACGGCTCCTTTGTTTTTTTCCTTCTCTTTTTCTTTCATCTTTGGCCCATACAAATTTTATTGGTTAATTAA
AA sequence
>Potri.012G048001.1 pacid=42783657 polypeptide=Potri.012G048001.1.p locus=Potri.012G048001 ID=Potri.012G048001.1.v4.1 annot-version=v4.1
MPSVRDRPASFNDGSGSNKLINSKRCHSWFVSTGASAVMELAIFIVSCFPSGNNGAMVKAGQRSTSNHVFTFEYSVLFPCVCRFFSYHVSFLNVSALLGG
GTQYGSFVFFLLFFFHLWPIQILLVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G048001
[exp]
0 1
AT1G74690 IQD31 IQ-domain 31 (.1) Potri.015G063600
[exp]
8.48 0.9046
AT2G45340 Leucine-rich repeat protein ki... Potri.002G147000
[exp]
9.94 0.8859
Potri.001G022601
[exp]
10.67 0.8893
AT1G15370 SNARE-like superfamily protein... Potri.001G193100
[exp]
12.24 0.8921
AT3G11590 unknown protein Potri.016G074300
[exp]
12.96 0.8879
AT1G20760 Calcium-binding EF hand family... Potri.002G008300
[exp]
12.96 0.8946
AT1G20530 Protein of unknown function (D... Potri.005G249400
[exp]
17.05 0.9020
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.018G145544
[exp]
18.97 0.8706
AT1G09540 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAI... Potri.005G001600
[exp]
30.16 0.8672 MYB61.2
AT5G50000 Protein kinase superfamily pro... Potri.015G074400
[exp]
30.19 0.8549

Potri.012G048001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.