Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73660 1065 / 0 protein tyrosine kinase family protein (.1) AT1G18160 649 / 0 Protein kinase superfamily protein (.1) AT1G08720 426 / 5e-133 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 420 / 2e-131 Protein kinase superfamily protein (.1) AT5G03730 348 / 2e-105 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 329 / 4e-102 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 327 / 8e-98 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G23050 321 / 4e-96 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 319 / 2e-95 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 319 / 3e-95 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040100 [exp] 1594 / 0 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 426 / 6e-133 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 424 / 5e-132 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 422 / 2e-131 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 417 / 8e-130 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 348 / 4e-105 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 345 / 6e-103 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.006G115800 [exp] 340 / 2e-102 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 343 / 3e-102 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027247 [exp] 983 / 0 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10038955 [exp] 980 / 0 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 503 / 1e-163 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10009062 [exp] 473 / 6e-150 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 429 / 4e-135 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 428 / 9e-135 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10014368 [exp] 357 / 1e-107 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 354 / 3e-107 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 327 / 2e-98 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 325 / 9e-97 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.012G048400.6 pacid=42783025 polypeptide=Potri.012G048400.6.p locus=Potri.012G048400 ID=Potri.012G048400.6.v4.1 annot-version=v4.1 ATGAAGAACTTTCTTAAGAAGCTTCATATCATGCCCAATCAATCACAGGATGCAGAGGGGTCAAATTCTTCAAGAGGCCATAAGTCCAGTAATGAATCAT CCTCTGATAATAAGTTTCTGCATTCTAGGTTGCAGGAGAATAAGCCCTTTTCTGGTCTTTCAAATTGGTTAAGTTCAGTTGCTAATAGGAAAAGTCCTAG CCCACCATCTTCAAATGTGACTAGAGGAGAGAGGGTGGAGCAACCGGAGTCGATTAGTAGTAGTGGTTTTGATGTTTCAGAAGGTGCAAGGCGTGATTCA GTGTCTTCCACCTCCAGGGATCCTGATGTTGAGGAGGAGTTTCAGATACAGCTTGCTTTGGAGTTGAGTGCAAGAGAGGATCCTGAGGCAGTCCAGATTG AGGCTGTTAAGCAAATAAGCTTGGGCTCTTGTGCACCTGAGCATACTCTTGCCGAACTCATTGCTTATCGGTACTGGAATTACAATGCTCTTAGCTATGA TGACAAGGTCTTGGATGGTTTTTATGATCTCTATGGTATCATGACCGAGTCCACATCAGACAAGATGCCTTCTCTTGTTGATTTGCAAGCAACACCAGTC TCAGGTGGTGTCACCTGGGAAGCAGTGCTGGTCAATAGGGCCGCTGATGCTAATTTGTTGAAACTTGAAAAGAAGGCACTGGAGATTGCTGTCAAGTCAA GGTCAGAATCTCAGGTTTTCATAGGCAGTGCTTTGGTGCGGAGGCTTGCTGTTTTAGTTTCTGATTACATGGGTGGAGCAGTTGGGGATCCCAGCAACTT GTCAAGAGCATGGCGGAGTCTTAGCTACAGTTTGAAAGCAAACCTTGGTAGCATGGTTTTGCCACTTGGTTCTCTTACAATCGGCTTGCCTCGTCATCGT GCACTGATGTTCAAGGTTTTGGCTGATAGTGTTGGTATACCATGTCGGTTGGTAAAAGGGCATCTGTACACCGGTTCTGATGATGTGGCTATGAACTTTG TAAAGATCGATGATGGAAGGGAATACATTGTTGATCTAACTGCGGATCCTGGCACACTTATTCCTTCTGATGCAGCTGGATCACATATAGAATATGATGA TTCATTCTTTTCTTCCAGTCCTTTTTCTAGAGACATTGACTCTTATCGTATAGCTTCTTCTAGTAGTGGACACACAAGTTCATTTGAAGAACATTCAGAA TTAGGGACATTGGAAAAGAGATTCAGATCGAGAAATATTGCTGCTTTAGGGAACCAATCTGATGTCAGAGGTGACTCTCATGAGGGTGCTAGTTTAACTA AGCTGAGCAAAGGTGAAGAAGAATCTACAATTTCCTTGAATGATTTTGGAAAAATTTCCATAGCTGAGAAGGTGCCAGTGCGGGAACTTCCTGGCAGACC TATTTACCCTTCTGCACATGCACGCTCTCCTTCTTGGACTGAAGGTGTTAGTTCTCCTTCTGTGCGTAGAATGAAAGTGAAAGATGTTTCACAATATATG ATAGATGCTGCAAAAGAGAATCCACAGTTAGCCCAGAAACTTCATGATGTGTTACTTGAAAGTGGTGTTGTTGCCCCTCCTAATTTGTTTACTGAGATTT ATGCTGAACAGTTAAATGCGTCTACTGCTGAGGCCACGTCCCCAACAGAAGGCAAGGATGGTCACAAACAGAGGACTGAAATCCGATATGTGAAGGATCA AGATGATCTTGTTCCTGCTCGATTTTTTCCTCTACTGCCTCCTAATGAACTGCCATATAAATCTAGTTCACCTGGTAATCAACCTGAGCAATCTAAACCT GTGGAAGGTTTAGGGATCAAACATCCTTTTGATACAAAGGAGATCACTGGACTACCCATATCATTGCAGTCTGAATTTACTCCTGTGAAATATGTAAAAA ATGTTCCTGTAGCTGCAGCAGCAGCTGCTGCTGCTGCTGTTGTTGCATCTTCTATGGTTGTTGCTGCAGCAAAGTCAAGTACTGACTCAAACCTTGAACT ACCTGTAGCAGCTGCTGCCACTGCCACTGCTGCAGCAGTGATGGCAACCACTGCAGCTGTCAACAAGCAATATGTGCAGGGTGCACGAAGTGATGGAGAT GCAGATAGTGCTGGTTATGAGCCTCATGGTAGTGGGGACAAGGGAAGTGGGGGGCGTGGCAGTGGGGGCCGTGGCAGTGGCGGCCGAGAACACAAAGCTT TAGTTGTCAATTCAGAAGGCGAGAGAATATCCGACAGATTGGCTGTCAATGTTCGCTCAAAATCTGATGCTGGACTGGATGATGTTGCAGAGTGTGAGAT TCCATGGGAGGAAATTACCTTGGGTGAACGAATTGGACTTGGATCATATGGAGAGGTATATCGCGGAGACTGGCATGGAACTGAAGTTGCTGTGAAGAGG TTCCTAGACCAAGATATTACGGGTGAAGCTCTTGCAGAATTCAGAAGTGAGGTTCGAATCATGAAGAGAGTCAGGCATCCCAATGTGGTTCTCTTCATGG GAGCAGTAACTCGTGCCCCTAATCTTTCAATTGTTACAGAGTTTATTCCTAGAGGTAGTTTGTATAGATTACTTCACCGGCCTAACAATCAATTGGATGA TCGTAGGCGTTTGAGGATGGCTCTTGATGCTGCTCGAGGAATGAATTATTTACACAGCTGCACCCCAATGATAGTACACCGTGATTTGAAGTCCCCAAAT CTTCTGGTTGATAAAAACTGGGTAGTGAAGGTATGTGATTTTGGGTTATCGAGGATAAAGAACAGCACATTTCTATCTTCAAGATCAACAGCAGGAACGG CAGAGTGGATGGCCCCAGAAGTGCTAAGAAATGAACCTTCAGACGAAAAGTGCGATGTTTATAGTTTTGGTGTTATATTATGGGAGCTCTCTACATTGCA ACAACCATGGGGTGGAATGAACCCAATGCAAGTTGTTGGTGCAGTTGGATTTCAACATCGCAGTCTTGACATTCCAAATGATATGGATCCTGCAATTGCA GATATAATTAGGAAGTGCTGGCAGACAGATCCAAGACTGAGGCCAACATTTGCAGAAATCATGGCTGCGCTGAAGCTATTGCAGAAGCCTATAACTGGTC CACAAGTGCCTAGACCAAATGCACCGTTGAGAAGTGGGCATTAG
AA sequence Show only first row Show all	>Potri.012G048400.6 pacid=42783025 polypeptide=Potri.012G048400.6.p locus=Potri.012G048400 ID=Potri.012G048400.6.v4.1 annot-version=v4.1 MKNFLKKLHIMPNQSQDAEGSNSSRGHKSSNESSSDNKFLHSRLQENKPFSGLSNWLSSVANRKSPSPPSSNVTRGERVEQPESISSSGFDVSEGARRDS VSSTSRDPDVEEEFQIQLALELSAREDPEAVQIEAVKQISLGSCAPEHTLAELIAYRYWNYNALSYDDKVLDGFYDLYGIMTESTSDKMPSLVDLQATPV SGGVTWEAVLVNRAADANLLKLEKKALEIAVKSRSESQVFIGSALVRRLAVLVSDYMGGAVGDPSNLSRAWRSLSYSLKANLGSMVLPLGSLTIGLPRHR ALMFKVLADSVGIPCRLVKGHLYTGSDDVAMNFVKIDDGREYIVDLTADPGTLIPSDAAGSHIEYDDSFFSSSPFSRDIDSYRIASSSSGHTSSFEEHSE LGTLEKRFRSRNIAALGNQSDVRGDSHEGASLTKLSKGEEESTISLNDFGKISIAEKVPVRELPGRPIYPSAHARSPSWTEGVSSPSVRRMKVKDVSQYM IDAAKENPQLAQKLHDVLLESGVVAPPNLFTEIYAEQLNASTAEATSPTEGKDGHKQRTEIRYVKDQDDLVPARFFPLLPPNELPYKSSSPGNQPEQSKP VEGLGIKHPFDTKEITGLPISLQSEFTPVKYVKNVPVAAAAAAAAAVVASSMVVAAAKSSTDSNLELPVAAAATATAAAVMATTAAVNKQYVQGARSDGD ADSAGYEPHGSGDKGSGGRGSGGRGSGGREHKALVVNSEGERISDRLAVNVRSKSDAGLDDVAECEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKR FLDQDITGEALAEFRSEVRIMKRVRHPNVVLFMGAVTRAPNLSIVTEFIPRGSLYRLLHRPNNQLDDRRRLRMALDAARGMNYLHSCTPMIVHRDLKSPN LLVDKNWVVKVCDFGLSRIKNSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRSLDIPNDMDPAIA DIIRKCWQTDPRLRPTFAEIMAALKLLQKPITGPQVPRPNAPLRSGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	0	1
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	3.60	0.8525
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	3.87	0.8440
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	8.36	0.8236
AT5G36930			Disease resistance protein (TI...		Potri.012G135700 [exp]	10.09	0.8032
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	12.96	0.8270
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	13.74	0.8206
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	16.15	0.8147	Pt-SPY.1
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	16.61	0.7991
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012601 [exp]	17.32	0.7942
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	19.07	0.8078

Compare expression of checked genes

Potri.012G048400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.