Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14900 65 / 5e-12 HMGA high mobility group A (.1) AT1G48620 65 / 5e-11 HON5 high mobility group A5 (.1) AT3G18035 62 / 4e-10 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT2G30620 58 / 1e-09 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 43 / 0.0002 winged-helix DNA-binding transcription factor family protein (.1) AT2G18050 41 / 0.0007 HIS1-3 histone H1-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040200 [exp] 476 / 1e-165 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.008G132400 [exp] 77 / 4e-16 AT1G14900 107 / 4e-29 high mobility group A (.1) Potri.010G109600 [exp] 77 / 6e-16 AT1G14900 98 / 3e-25 high mobility group A (.1) Potri.017G129400 [exp] 72 / 2e-14 AT1G14900 102 / 2e-27 high mobility group A (.1) Potri.004G087500 [exp] 69 / 2e-13 AT1G14900 91 / 1e-22 high mobility group A (.1) Potri.002G199900 [exp] 50 / 5e-07 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.008G162300 [exp] 45 / 4e-05 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.007G014200 [exp] 44 / 7e-05 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.010G076800 [exp] 42 / 0.0002 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028911 [exp] 169 / 1e-46 AT1G48620 128 / 4e-32 high mobility group A5 (.1) Lus10024594 [exp] 163 / 2e-44 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10004328 [exp] 151 / 5e-40 AT3G18035 129 / 2e-32 winged-helix DNA-binding transcription factor family protein (.1) Lus10032231 [exp] 137 / 4e-35 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10004056 [exp] 64 / 1e-11 AT1G14900 104 / 5e-28 high mobility group A (.1) Lus10002284 [exp] 62 / 7e-11 AT1G14900 108 / 6e-30 high mobility group A (.1) Lus10022001 [exp] 61 / 5e-10 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 60 / 6e-10 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 56 / 5e-09 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 57 / 7e-09 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00538 [poplar] [flax] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Potri.012G048500.1 pacid=42784020 polypeptide=Potri.012G048500.1.p locus=Potri.012G048500 ID=Potri.012G048500.1.v4.1 annot-version=v4.1 ATGGACCCACCTCCTCCTTCATTATTGATCCCTCCACCAGTTCCGCCGTCCATCCCTCCACCACCATCCACCACCGAAACCCCCACCACCACTGAAACCC CCCATTTAGCTCCTCCACCCAACCCTACCCCCACCATAACCCATCCTTCCTATGCTGAGATGATATATTCAGCGATTACAGCTTTGAAGGAACAAGATGG GTCAAGCAGGATAGCCATAGCAAAGTATATAGAGAGAGCTTACCCTGGTTTATCACCGAGTCACTCTGATTTGTTGACACATCACTTAAAACGCTTGAAA AATAGTGGGGCTCTTGTTCTCAACAAGAAATCTTACTTGTTACCCAGATCTGACATTAACACAGACATCAGTGCTACTATAACTACCACAGCTACTGTTT CTACTAACCCACCTCAAATTCAGCCACAGTATGTTGCTCCTATCTCTTCAGCTCCTCCTGAGCAGAAAAGGGGCCGTGGAAGGCCCCCTAAAACTAAGGC TAATGGGCTTCCTCCAACTCCTGCGTCTGTGCTTGCTAATGGGCAGCCACAGACTGGTCTTGGCTCACATGTTTCTGTTACTGCCCAGACTCAAAGTCAG CTTGTTGTGAGTTCTGTTGGGACTCCTATTGACTCCACCTCAACGGGGAGGAAAGGCCGAGGACGGCCAAAGAAGATGGTGGTGACTGAAGCTGGGCCGT TGGTGGTGAAGAAAGGAAGAGGGAGGCCACCGAATAGCGGGCCGTTGGGGTCCAAGAAGAGTCCAGGAAGGCCCAGAAAGCCTAAGTCTTTGGTGGGTGC TAAAAAGGGTCCTGGACGTCCACCTAAGAATCAGTTAAAGCCAGTTACTGTTCCTTACGCTGTTGCTTCTCCTACTGCTACTGCTACTGATGCAGCAGCT GTGTTTAATGTGGCATCACCAAAGCCCAGAGGCAGGCCAAGGAAGGGTGCAACCCCAACTTCTGCTGGCGCTGTTGTGATGGTGCAGGCTAAGCGACCGG GTCGCCCGGCTAAGGTTCCTGGGGTTATGAAGCTGAAGCCTAAGAAGAATTCTGGCAGGCCTGTCGGCCGGCCTAGGAAGAATGCAAATGCACCATGGGC AATTAACAGGGCATCTCAGCTTCAAGCACAAGCAGAATTGCATGGAGATCTTAAGAGGAAACTTGAATTTTTTCAATCAAGAATTAAGCAAGCCGCTGGG GTCCTAAAGCCTCTTTTGACCAGTGCCACAATCAGTGCAGTTGCAGCAATCCAAGAATTAGAAGGGCTTGCATCAATGGACATTAATGTACCATGGAGAG AGGAACCTCAACCACAAACTCAGCCCCAGCCACAGCCGCTGCCCCTGCCCCTGCCCCTGCCCCAGCCCCAGCCGCAGTTGCTGCCCCAGCCCCAGCCGCT GCAGCAACTGCTCAAGAGTTAG
AA sequence Show only first row Show all	>Potri.012G048500.1 pacid=42784020 polypeptide=Potri.012G048500.1.p locus=Potri.012G048500 ID=Potri.012G048500.1.v4.1 annot-version=v4.1 MDPPPPSLLIPPPVPPSIPPPPSTTETPTTTETPHLAPPPNPTPTITHPSYAEMIYSAITALKEQDGSSRIAIAKYIERAYPGLSPSHSDLLTHHLKRLK NSGALVLNKKSYLLPRSDINTDISATITTTATVSTNPPQIQPQYVAPISSAPPEQKRGRGRPPKTKANGLPPTPASVLANGQPQTGLGSHVSVTAQTQSQ LVVSSVGTPIDSTSTGRKGRGRPKKMVVTEAGPLVVKKGRGRPPNSGPLGSKKSPGRPRKPKSLVGAKKGPGRPPKNQLKPVTVPYAVASPTATATDAAA VFNVASPKPRGRPRKGATPTSAGAVVMVQAKRPGRPAKVPGVMKLKPKKNSGRPVGRPRKNANAPWAINRASQLQAQAELHGDLKRKLEFFQSRIKQAAG VLKPLLTSATISAVAAIQELEGLASMDINVPWREEPQPQTQPQPQPLPLPLPLPQPQPQLLPQPQPLQQLLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14900		HMGA	high mobility group A (.1)		Potri.012G048500 [exp]	0	1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.004G208900 [exp]	2.00	0.8925
AT5G64090			unknown protein		Potri.001G209800 [exp]	4.79	0.8415
AT5G10710			unknown protein		Potri.018G005900 [exp]	4.89	0.8631
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	5.29	0.8892
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	8.00	0.8925
AT3G22530			unknown protein		Potri.010G086400 [exp]	8.77	0.8703
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	9.00	0.8896
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	9.00	0.8735
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Potri.013G068200 [exp]	9.16	0.8436
AT3G42170			BED zinc finger ;hAT family di...		Potri.003G031700 [exp]	11.22	0.8751

Compare expression of checked genes

Potri.012G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.