Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18040 793 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 766 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT1G73670 759 / 0 ATMPK15 MAP kinase 15 (.1) AT5G19010 666 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 651 / 0 ATMPK20 MAP kinase 20 (.1) AT2G01450 613 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT1G53510 612 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G14720 611 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT4G01370 307 / 2e-99 ATMPK4 MAP kinase 4 (.1) AT2G43790 296 / 7e-95 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040300 [exp] 941 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.008G200800 [exp] 679 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.010G029700 [exp] 679 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.002G059900 [exp] 658 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.008G130000 [exp] 655 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.005G201800 [exp] 654 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.010G112200 [exp] 651 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.011G102500 [exp] 622 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 620 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038956 [exp] 758 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10027248 [exp] 682 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 653 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 641 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021784 [exp] 629 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10005568 [exp] 617 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 614 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10034601 [exp] 520 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10027091 [exp] 310 / 9e-100 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 310 / 9e-100 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G048600.2 pacid=42782521 polypeptide=Potri.012G048600.2.p locus=Potri.012G048600 ID=Potri.012G048600.2.v4.1 annot-version=v4.1 ATGGGTGGGAGTGGAACGCTCGTGAACGGTGTTCGTCGCTGGTTTCAACGCCGAAGCAACAATAATAATAGTAGTTGTATTCCACAATCATCGGTAAAGG TGAAGGAGGAAATAGAGGAGACAGAGGAGCAGGAGTTAACTGTGATTGAGGATTTTGATATTTCTGGTCTCCAACTTATTAGAGTTCCTAAACGCATCCA TTTCCCTCCTGGTTTTACCATGGATCCTCACAAGAAGGGCTCGGCTGAGGCAGATTTCTTCACCGAGTATGGAGAAGGTAATCGATACCAAGTACAAGAA GTCGTCGGGAAAGGTAGTTATGGTGTTGTTGGCTCAGCAATTGATACTCATACTGGAGAAAAGGTTGCAATCAAGAAAATTAATGATGTTTTTGAGCATG TTTCTGATGCCACACGTATTCTGAGAGAAATTAAACTCCTTCGGTTGCTTCGTCATCCTGATATTGTAGAAATAAAGCACATTATGCTTCCTCCTTCGCG TAGGGAATTCAGAGACATCTATGTTGTTTTTGAGTTGATGGAATCTGATCTTCATCAAGTAATCAAGGCAAATGATGATCTTACACCTGAGCATTATCAG TTTTTCTTGTATCAGCTTCTTCGTGGTCTAAAATATATACATACAGCAAATGTGTTTCATCGAGATTTAAAGCCAAAAAACATTCTTGCTAATGCTGACT GCAAATTGAAGATATGTGATTTTGGTCTTGCTAGAGTATCTTTCAATGATGCCCCATCAGCTATTTTTTGGACAGACTATGTAGCAACTAGGTGGTATCG TGCTCCTGAACTCTGTGGCTCTTTCTTCTCCAAATACACTCCTGCAATTGATACTTGGAGCATTGGATGTATATTTGCCGAAATGCTTACAGGAAAACCA CTGTTTCCTGGGAAAAATGTGGTTCACCAATTGGATCTCATGAGTGATTTGCTAGGCACTCCTTCTCCTGAATCTCTTTCAAGGATTCGAAATGAAAAGG CAAGGAGGTATCTTAGTAGCATGCGGAAGAAACCACCTGTTCCTTTCTCTCAGAAGTTCCCTAATGTTGATCCCTTGGCTCTTCGCCTACTGGAGCGTCT GCTTGCATTTGATCCTAAAGATCGTCCATCAGCTGAAGAGGCTTTAGCTGATCCTTACTTTAATGGTTTGTCAAATGTTGAGCGTGAGCCATCCACTCAA CCTATTTCAAAATTGGAGTTTGAGTTCGAGAGGAGGAAATTAACAAAAGACGATGTAAGAGAGCTGATCTACAGAGAGATATTAGAGTATCACCCACAGA TGCTGCAGGAGTACCTTCGTGGTGGAGAGCAGACTAGCTTTATGTATCCAAGTGGCGTTGATCGATTCAAGCGACAATTTGCGCATCTTGAGGAGCACTA TGGTAAGGGGGAAAAAAACACTCCACTCCAAAGACAGCACGCATCCTTGCCTAGAGAGCGGGTTCCTGCTCCTAAGGATGAGACTGCAGCCCGAAACACT GATATTGAGGGGCGAACTGCAGCTTCTGTTGCAACATCTCTTCAAAGCCTCCCAGGGTCACAGCAACCAGATGGTTCAGAGGATGCGACAGCTGCAGCAC AAAATGGATCTAGCAAGCCAAATTACAGTAATCGAAGCTTATTGAAGAGTGCTAGCATCAGTGCCTCCAAATGTGTGGTTGTGAAACCAGAAGGAGATAC AGAGGAGGAAACGATTACTGAGGCCAATGATGAGGTTGTAAATGACTTGTCTGAAAAGGTGGCAGCCTTGTAG
AA sequence Show only first row Show all	>Potri.012G048600.2 pacid=42782521 polypeptide=Potri.012G048600.2.p locus=Potri.012G048600 ID=Potri.012G048600.2.v4.1 annot-version=v4.1 MGGSGTLVNGVRRWFQRRSNNNNSSCIPQSSVKVKEEIEETEEQELTVIEDFDISGLQLIRVPKRIHFPPGFTMDPHKKGSAEADFFTEYGEGNRYQVQE VVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHYQ FFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDTWSIGCIFAEMLTGKP LFPGKNVVHQLDLMSDLLGTPSPESLSRIRNEKARRYLSSMRKKPPVPFSQKFPNVDPLALRLLERLLAFDPKDRPSAEEALADPYFNGLSNVEREPSTQ PISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKNTPLQRQHASLPRERVPAPKDETAARNT DIEGRTAASVATSLQSLPGSQQPDGSEDATAAAQNGSSKPNYSNRSLLKSASISASKCVVVKPEGDTEEETITEANDEVVNDLSEKVAAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.012G048600 [exp]	0	1
					Potri.003G152701 [exp]	8.48	0.8120
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.011G085000 [exp]	15.87	0.7892	LCOSC2.5
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.003G095300 [exp]	16.43	0.7707	SYP23.1
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133700 [exp]	17.08	0.7597
					Potri.008G125350 [exp]	27.82	0.7514
AT1G42480			unknown protein		Potri.002G007601 [exp]	39.59	0.7242
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	40.02	0.7421
AT1G49120	AP2_ERF	CRF9	cytokinin response factor 9, I...		Potri.015G054500 [exp]	45.23	0.6988
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133600 [exp]	46.30	0.7341
					Potri.013G126650 [exp]	49.47	0.7398

Compare expression of checked genes

Potri.012G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.