Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GT4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36750 549 / 0 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36800 549 / 0 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 544 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 538 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 530 / 0 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36790 525 / 0 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 488 / 8e-170 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 480 / 1e-166 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15480 373 / 5e-125 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 370 / 9e-124 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120600 [exp] 545 / 0 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 527 / 0 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302300 [exp] 426 / 1e-145 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 420 / 3e-143 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 419 / 3e-143 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 417 / 3e-142 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303300 [exp] 416 / 8e-142 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303000 [exp] 413 / 8e-141 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 409 / 3e-139 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014404 [exp] 533 / 0 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10023894 [exp] 529 / 0 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 524 / 0 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 520 / 0 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 518 / 0 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016268 [exp] 482 / 2e-167 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10014402 [exp] 478 / 1e-165 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 472 / 2e-163 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10012011 [exp] 471 / 2e-163 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 469 / 2e-162 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.012G048700.1 pacid=42783001 polypeptide=Potri.012G048700.1.p locus=Potri.012G048700 ID=Potri.012G048700.1.v4.1 annot-version=v4.1 ATGGCTTCCCAATCCCACCAACTCCACTTTGTCTTGTTTCCTTTGATGGCTCAAGGACACATGATTCCTATGTTTGATATCGCCAAAATGTTGGCGCACC ATGGTGTCATCGTCACCATAGTCACCACACAGCTTAATGCAAAGCGTGTTGCCATCCCTCTTGCTCGTGCAGCAGAATCCGGGCTCCAGATAAAGTCTGT TGAAATTCCGTTTCCTTGTCAAGAAGCAGGATTGCCAAATGAGATGGAGAATTTTGACATGCTTCCTTCACTAGGCTTAGGCTATGAGTTATTCATGGCA GCTAATATGCTACAAGAGCCGGTCGAAAGATTGTTTGAAGTGCTGACACCAAGGCCGAGTTGCATAATCTCGGATATGTGTCTTCCCTACACAAGTGATG TGGCGACCAAGTTCGGTATTCCAAGAATCTCTTTCAATGGGTTCTCTTGCTTTTGTACCCTGTGTTTGCACACCATACAAATTAACAAGGTTCTTGAGAG TGTAAACTCTGAATCGGAGCTTTTCGTAGTGCCTGGACTGCCTGATCATATTGAAATGGCCACAAACCAGCTTCCTTATGCCATGTTAGATGTAAAAGAT TTTTCTGCTCAAGTTTCAGGTGCTGAGATGCTGAGGTATGGGTTTATTATTAATTCATTTGAAGAGTTGGAGCCAGCATACGTTCAAGAATACGAAAGGG CAACAGGAGGTAAAGTTTGGTGCGTTGGTCCAGTTTCTGTATGCAACAAAGACGACGTAGACAAAGTTCACAGAGGTGACAAATCCTCAATTGATGAATC GGAATGCTTGAAGTGGCTTGATTCACAGCAACCAAGGTCTGTAATATATGTTTGTCTTGGTAGTCTCTGTAATCTAATAACCCCACAACTGATGGAGCTC GGGTTGGGCTTGGAAGCATCAAACAAACCATTCATATGGGTTACAAGAGGTGGAGAAAAATCAAGAGAATTGGAGAATTGGTTTGAAGAGAACGGTTTTA AGGAGAGGACAAAAGGGAGAGGCCTCATAATTCAGGGCTGGGCACCACAAGTTGCAATACTATCACATTCAGCAATTGGAAGCTTCCTAACGCATTGTGG TTGGAATTCAGTTCTAGAAGGTATATCCGCAGGCTTGCCGATGGTTACATGGCCACTTTTCGGAGACCAGTTTTGTAATGAGAAGTTAGTTGTCGAAGTG TTGAAGATTGGTGTGAGGGTTGGGTCAGAGGTTACTATAAGATGGGGAGAGGAAGAGAAATTTGGAGTGTTGGTGAAAAAGGAACAGGTAAAGAACGCTG TAAACAGTCTTATGAATGATGGAGAGGAATGTGAAGAGAGAAGAAGAAGAGTTCAAGAGCTTAGAAAGATGGCATACAAAGCAGTGGAAGAAGAGGGCTC CTCTTATCTCAGCATGAAACTGCTTATTGAAGATATCAGGAAGCACACATTTTTTAAGTAA
AA sequence Show only first row Show all	>Potri.012G048700.1 pacid=42783001 polypeptide=Potri.012G048700.1.p locus=Potri.012G048700 ID=Potri.012G048700.1.v4.1 annot-version=v4.1 MASQSHQLHFVLFPLMAQGHMIPMFDIAKMLAHHGVIVTIVTTQLNAKRVAIPLARAAESGLQIKSVEIPFPCQEAGLPNEMENFDMLPSLGLGYELFMA ANMLQEPVERLFEVLTPRPSCIISDMCLPYTSDVATKFGIPRISFNGFSCFCTLCLHTIQINKVLESVNSESELFVVPGLPDHIEMATNQLPYAMLDVKD FSAQVSGAEMLRYGFIINSFEELEPAYVQEYERATGGKVWCVGPVSVCNKDDVDKVHRGDKSSIDESECLKWLDSQQPRSVIYVCLGSLCNLITPQLMEL GLGLEASNKPFIWVTRGGEKSRELENWFEENGFKERTKGRGLIIQGWAPQVAILSHSAIGSFLTHCGWNSVLEGISAGLPMVTWPLFGDQFCNEKLVVEV LKIGVRVGSEVTIRWGEEEKFGVLVKKEQVKNAVNSLMNDGEECEERRRRVQELRKMAYKAVEEEGSSYLSMKLLIEDIRKHTFFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	0	1	Pt-GT4.1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	2.00	0.9110	Pt-LHT1.2
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	2.00	0.9061
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	2.00	0.8971
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	4.89	0.8688
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	6.48	0.8980
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	6.70	0.8953
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.008G159000 [exp]	6.92	0.8290	APS1.2
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	7.74	0.8647
AT5G07610			F-box family protein (.1)		Potri.007G027200 [exp]	8.36	0.8876
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	10.67	0.8903

Compare expression of checked genes

Potri.012G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.