Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 1099 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 657 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 631 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 534 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 528 / 3e-177 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 513 / 1e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 513 / 5e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 513 / 1e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 504 / 2e-168 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46460 494 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005400 [exp] 683 / 0 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 677 / 0 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G081700 [exp] 571 / 0 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 560 / 0 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 560 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 546 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G038400 [exp] 528 / 3e-179 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 519 / 6e-174 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 528 / 1e-173 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 1148 / 0 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 666 / 0 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 554 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 544 / 0 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 525 / 5e-176 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 538 / 1e-175 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015414 [exp] 519 / 8e-172 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 515 / 5e-170 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 510 / 9e-170 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 508 / 3e-169 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.012G048800.1 pacid=42783262 polypeptide=Potri.012G048800.1.p locus=Potri.012G048800 ID=Potri.012G048800.1.v4.1 annot-version=v4.1 ATGGGCGGGAATTACCGTTTGAGACAGTTACACAGTAGCTGCCCCATTCCGACCATCAATTTCCAATCAGCAAAACCCAAAAACTCATACCCTTCAAAGA AAACATCAACGTCCCAAAACAACAAAAAAAAGCAAAACTTCAGCACCACAGACTCTGACATTGTAAAATGGAACATTGCCATAACCACCCACATGCGAAA TGGCCTATGCGAATCCGCTCTTCGAGTGTTTAATTCCATGTCTCGAAGAAGCTCGGTATCGTACAATGCAATGATTTCTGGGTACTTACGGAATCACAAG TTTGATCTTGCGAGGGACTTGTTTGATAAAATGCCTGAGAGAGATTTGTTTTCTTGGAATGTGATGTTAACTGGGTATGTCAGGAATAGAGATCTTAAAA CTGCGCGTGCTTTGTTTGAGAGGATGCCGGAAAGGGATATTGTTTCTTGGAATGCCATGTTATCTGGGTATGCGCAGAATGGGTTTGTTGACGAGGCAAG AGAGATTTTTGATAAGATGCCGCTTAAGAATGGGATTTCGTGGAATGGGTTGCTTGCAGCATATGTGCAGAATGGGAGGATAGAGGATGCAAAGAGGTTG TTTGAGTCGAAGATGGATTGGACGCTTGTTTCTTGGAATTGTTTGATGGGTGGGTTTGTGAGGAAGAGGAGGTTACTGGATGCTAGGAGTGTTTTTGATA GGATGCCTGTGAGAGATGAGATTTCGTGGAATACTATTATTAGTGGTTATGCACAGAATGGAGAGATGGAAGAGGCACGAAGATTGTTTGAGGAGTCTCC AATTCAGGATGTGTTTACATGGACAGCTATGGTTTCTGGATATGTGCAAAATGGGAAGCTGGATGAAGCAAGAAGTATTTTTGATAGGATGCCTGAGAAG AACTCAGTTTCTTGGAATGCAATGATTGCAGGGTATGTGCAATGTAAACGAATGGACATGGCAAGAGAATTGTTTGAGGAAATGCCTTCTAGGGATGCTA GTTCTTGGAATACGATGATTACTGGATATGCTCAGAGTGGATATATTGCTCATGCCAGGAACTTGTTTGATAACATGCCCCAACGTGATTCTATTTCCTG GTCAGCTATGATTGCTGGCTACTCTCAAAACGGTTGTAGTGAAGAGGCTTTACATTTTTTTGTAGAAATGCAAAGAGATTGTGAAAGGTTGAATAGATCA TCATTTACCTGTGCTTTGAGCACATGTTCCAACATTGCAGCTTTGGAATTGGGGAGGCAGTTGCATTGTCGGCTGGTCAAGGCTGGGTACCAGACTGGGT GGTACGTGGGGAATGCTCTTCTGGCGATGTATTGTAAGTGTGGAAGTATAGATGAAGCACGAGATGCATTCCAAGAAATACTAGAAAAGGATGTGGTGTC TTGGAACACAATGATTCATGGTTATGCAAGGCATGGTTTTGGGGAAGAGGCTCTGACAGTTTTTGAGTTAATGAAGACTACAGGAATCAGGCCAGATGAT GCCACTATGGTTTCTGTATTGGCTGCTTGTAGTCATGCTGGCTTGGTAGACCAGGGCAGTGAATATTTCTACTCGATGAATCGTGATTATGGTATAACTG CAAAATTAGTGCACTATACCTGTATGGTTGATCTTCTAGGTCGAGCAGGGCAACTAGAAGAGGCCCAGAATTTGATGAAAAACATGCCTTTTGAACCAGA TGCTGCAACCTGGGGTGCTTTGCTTGGTGCAAGCAGAATTCATGGCAATACAGAATTGGGTGAAAAGGCTGCTCAGATCATCTTTGAAATGGAGCCTCAT AATTCAGGAATGTATATACTTCTCTCAAAATTATATGCAGCTTCAGGAAGATGGTCTGATGCTGGTAAGATGAGATTAGAAATGAGGAATAAAGGTGTGA AGAAGGTACCTGGGTACAGTTGGCTTGAAGTTCAAAATAAAATTCACACATTTAAAGTTGGGGACACTTCCCACCCGCATACAGATAAGATATATACCTT TTTAGAAGAGATGGATTTGAAACTGAAGCAGGAGGGATATATCTCCTCTACAAATTTGGTCTTTCATGATGTGGAAGAGGAAGAGAAGGTGCATATGCTC AAGTATCACAGTGAGAAATTAGCTGTGGCATATGGCATTCTGTACATTCCTGCTGGGAGACCGATCCGTGTGATAAAAAACTTGCGGGTGTGTGAAGATT GTCATAATGCCATTAAGTACATATCAAAGATTGTGGGAAGATTGATCATCCTAAGGGATAACCATCGCTTTCACTACTTTGAGGGAGGATCATGTTCCTG TAGAGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.012G048800.1 pacid=42783262 polypeptide=Potri.012G048800.1.p locus=Potri.012G048800 ID=Potri.012G048800.1.v4.1 annot-version=v4.1 MGGNYRLRQLHSSCPIPTINFQSAKPKNSYPSKKTSTSQNNKKKQNFSTTDSDIVKWNIAITTHMRNGLCESALRVFNSMSRRSSVSYNAMISGYLRNHK FDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFDKMPLKNGISWNGLLAAYVQNGRIEDAKRL FESKMDWTLVSWNCLMGGFVRKRRLLDARSVFDRMPVRDEISWNTIISGYAQNGEMEEARRLFEESPIQDVFTWTAMVSGYVQNGKLDEARSIFDRMPEK NSVSWNAMIAGYVQCKRMDMARELFEEMPSRDASSWNTMITGYAQSGYIAHARNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRS SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDD ATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPH NSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHML KYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	0	1
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	3.60	0.9292
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	4.47	0.9211
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	4.58	0.9243
AT3G22440			FRIGIDA-like protein (.1)		Potri.018G078701 [exp]	6.00	0.9162
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	6.48	0.9277
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	6.70	0.9170
AT5G07900			Mitochondrial transcription te...		Potri.012G046700 [exp]	7.74	0.8613
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	12.68	0.9156
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	15.00	0.9130
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	15.55	0.8913

Compare expression of checked genes

Potri.012G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.