Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18050 353 / 1e-121 unknown protein AT4G28100 195 / 3e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040900 [exp] 535 / 0 AT3G18050 347 / 2e-119 unknown protein Potri.019G118300 [exp] 202 / 1e-62 AT4G28100 408 / 5e-144 unknown protein Potri.013G148700 [exp] 200 / 6e-62 AT4G28100 377 / 8e-132 unknown protein Potri.008G182733 [exp] 40 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027253 [exp] 342 / 2e-117 AT3G18050 306 / 2e-103 unknown protein Lus10038961 [exp] 338 / 7e-116 AT3G18050 308 / 6e-104 unknown protein Lus10018524 [exp] 187 / 4e-57 AT4G28100 397 / 1e-139 unknown protein Lus10039742 [exp] 187 / 4e-57 AT4G28100 399 / 2e-140 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G049000.3 pacid=42783933 polypeptide=Potri.012G049000.3.p locus=Potri.012G049000 ID=Potri.012G049000.3.v4.1 annot-version=v4.1 ATGTCCCTAAACATTCTAACTTTCCTCTTGTTACTCACTTGTTTTCCTCTTCTCCTTGCGGGTATGCCCAACCCGGACCCGGCTACAATTCAACCATTTA AACCAGGCCCAACACCGCCAGCAACAATCCCTGCATCCCCTGAGCAATCTAACCTTGCTGGTTGCCCATTAGAGCTTCCCAATGAACTCTTCAATGGCAT TAAATCAGCTTGTGGTAGTGGCTCCTCTGCTAGCGGGCACCTCCACAGGACCCGGTGCTGTCCAGTTCTTGCTGCTTGGCTTTACTCTGCTTACTCTGCC ACTGCACTTAGCAGAGCTAACAAAGTAATCCCAGCAACAACAACGGGTCGTTCTCCATCGTATGACATGCCCTTGCTTCCTGATGACTCCGAGACTTGTG TTGATGGGCTCTCCAAAGGGTTGAAAGAGAAAGGCATAGAATTGGTTAAGCCTAATGAGACTTGTGATGTTGTGTATTGTTATTGTGGTATTAGATTGCA CCCTCTGAGTTGCCCGGAAGCCTTTTCTTTGAACCGAAAGGGAAAGCTTGTTGGGGATAAGAGAGTTAAGAAATTAGAAAGAAATTGCTTGAGTAATAGT AACAATGTGAATGGATTTCCTGGTCTTGGTGGCTGCTCCAAGTGCTTGAACAGTCTTCACTTGCTTAACAACAAGAAGACTTTAAATTCAAGCAAATCAG ACGATAGGACCGCAAGAATGCACAGCAAAGATTGCCAGTTGATGGGTCTTACATGGCTACTTGCCAAGAATCGCACGGCTTACATTCACACAGTTACTGC AGTCATACGAGCTATGATGCTGAGCACCGACGGCTTTGATCCACAGTCGTGCACTCTCAACAGTGACGGAATGCCTCTAGCCGTAGATTCTTCTGAAATC TCCAACAATTCTTTGTCAATCTGTCATCAAGTTCCCATCTATGCAGCCATGGCTTTCATTTGTTTGTTAAATCTTCTACTCATTGTACCATCCACCAAAT TTTAG
AA sequence Show only first row Show all	>Potri.012G049000.3 pacid=42783933 polypeptide=Potri.012G049000.3.p locus=Potri.012G049000 ID=Potri.012G049000.3.v4.1 annot-version=v4.1 MSLNILTFLLLLTCFPLLLAGMPNPDPATIQPFKPGPTPPATIPASPEQSNLAGCPLELPNELFNGIKSACGSGSSASGHLHRTRCCPVLAAWLYSAYSA TALSRANKVIPATTTGRSPSYDMPLLPDDSETCVDGLSKGLKEKGIELVKPNETCDVVYCYCGIRLHPLSCPEAFSLNRKGKLVGDKRVKKLERNCLSNS NNVNGFPGLGGCSKCLNSLHLLNNKKTLNSSKSDDRTARMHSKDCQLMGLTWLLAKNRTAYIHTVTAVIRAMMLSTDGFDPQSCTLNSDGMPLAVDSSEI SNNSLSICHQVPIYAAMAFICLLNLLLIVPSTKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18050			unknown protein		Potri.012G049000 [exp]	0	1
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.010G237600 [exp]	5.00	0.8644
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Potri.017G059100 [exp]	10.67	0.7808
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.010G052500 [exp]	16.85	0.8586
AT1G22610			C2 calcium/lipid-binding plant...		Potri.019G080000 [exp]	22.67	0.7354
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.006G064400 [exp]	26.53	0.8447
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.012G093400 [exp]	28.14	0.8113
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035200 [exp]	38.41	0.8162
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	41.56	0.7820	Pt-PAP.2
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.011G047700 [exp]	57.44	0.8107
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	65.66	0.7908

Compare expression of checked genes

Potri.012G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.