Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06925 157 / 4e-51 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) AT4G29460 65 / 3e-14 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT4G29470 64 / 8e-14 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT2G19690 62 / 2e-13 PLA2-BETA phospholipase A2-beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070400 [exp] 191 / 3e-64 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.018G132100 [exp] 174 / 3e-57 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G149700 [exp] 64 / 3e-14 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011960 [exp] 144 / 3e-45 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Lus10042892 [exp] 64 / 5e-14 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1) Lus10028189 [exp] 62 / 3e-13 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G049101.1 pacid=42784297 polypeptide=Potri.012G049101.1.p locus=Potri.012G049101 ID=Potri.012G049101.1.v4.1 annot-version=v4.1 ATGTTTGCAATAAGCCTCCCTCATCTCTCAATCGGCAAGTATTGTGGGCTTCTATATGGTGGATGCCCAGGAGAGAAGCCTTGTGATGGCCTTGATGCTT GTTGCATGAAGCATGATGCCTGTATCCAATCAAAGAATAATAGCTATCTAAGTCAAGAGTGTAGCCAAAACTTCATCAGTTGTATGAGCAATTTCAAAAC AGGTGCTCGGACGTTCAAGGGAAACAAATGCAGGGCTGATGAAGTTATTCAAGTTATATCTGTAGTCATGGAAGCTGCTTTGCTTGCCGGAAGAGCATTT CATAAGCCATAA
AA sequence Show only first row Show all	>Potri.012G049101.1 pacid=42784297 polypeptide=Potri.012G049101.1.p locus=Potri.012G049101 ID=Potri.012G049101.1.v4.1 annot-version=v4.1 MFAISLPHLSIGKYCGLLYGGCPGEKPCDGLDACCMKHDACIQSKNNSYLSQECSQNFISCMSNFKTGARTFKGNKCRADEVIQVISVVMEAALLAGRAF HKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	0	1
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	6.24	0.9768
					Potri.010G139766 [exp]	9.48	0.9724
					Potri.010G219950 [exp]	10.67	0.9722
					Potri.001G076400 [exp]	11.61	0.9319
					Potri.012G026150 [exp]	12.36	0.9683
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.018G151400 [exp]	12.40	0.9588
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	17.74	0.9585
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	17.97	0.9570
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109800 [exp]	21.21	0.9569
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	28.72	0.9442

Compare expression of checked genes

Potri.012G049101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.