Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 1019 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 903 / 0 nucleotide binding (.1.2) AT5G52820 73 / 2e-13 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 69 / 3e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 64 / 9e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 64 / 2e-10 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G32700 63 / 4e-10 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT1G52360 62 / 1e-09 Coatomer, beta' subunit (.1.2) AT1G73720 60 / 2e-09 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G02730 60 / 2e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041200 [exp] 1184 / 0 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 69 / 3e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.007G108200 [exp] 63 / 3e-10 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.001G221000 [exp] 61 / 7e-10 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G250200 [exp] 61 / 8e-10 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.019G096900 [exp] 61 / 1e-09 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 61 / 2e-09 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 59 / 2e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 60 / 3e-09 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027252 [exp] 1087 / 0 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 1075 / 0 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10032444 [exp] 919 / 0 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10042944 [exp] 917 / 0 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10029493 [exp] 71 / 1e-12 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 71 / 2e-12 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 69 / 2e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 69 / 3e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 69 / 9e-12 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10012230 [exp] 65 / 5e-11 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G049200.1 pacid=42783374 polypeptide=Potri.012G049200.1.p locus=Potri.012G049200 ID=Potri.012G049200.1.v4.1 annot-version=v4.1 ATGACAGAGCTGGCAGAAACCTACGCTTGCGTTCCCTCAACAGAGCGAGGCAGGGGGATCCTAATTTCCGGTCATCCAAAAACCAATAAAATCCTCTACA CAAACAACCGATCAATCCTCATCCTCAACCTTGACAACCCACTTGACGTCTCCGTCTATGGCGAGCACGCTTACCAAGCTACCGTCGCACGATACTCTCC CAATGGCGAGTGGATCGCCTCCGCTGATGTTTCTGGGACTGTCAGGATCTGGGGTGCTTACAATGATCATGTCTTGAAAAAAGAATTCAAAGTACTTACT GGTCGGATCGATGATCTTCAGTGGTCACCTGATGGGTTGAGGATCGTTGCATCTGGGGATGGAAAAGGGAAGTCTCTTGTTCGTGCTTTTATGTGGGATT CGGGGACTAATGTTGGGGAATTTGATGGGCATTCGAGGCGAGTTTTGAGTTGTGCATTTAAGCCAACCAGACCCTTTCGAATTGTGACGTGTGGTGAGGA TTTCTTGGTTAATTTTTATGAAGGACCACCATTTAAATTCAAGTCATCTCACAGGGATCATTCAAATTTTGTGAATTGTGTACGGTTTTCTCCAGATGGT AGCAAGTTTATCAGTGTAAGTTCTGATAAGAAAGGCATACTGTTTGATGGAAAGACAGGAGAGAAGATTGGACAGATTTCTTCCGAGGATGGTCATAAGG GCAGCATTTATGCTGTTAGTTGGAGTCCTGATGGTAAACAGGTGCTGACAGTATCTGCTGACAAGTCTGCAAAAGTGTGGGAGATCTGTGATGATGGTAG TGGAAAGTTAACAAAAACTTTGACTTCTTCTGGCTCAGGTGGAGTGGATGACATGCTAGTTGGTTGCCTTTGGCAGAATGATCATCTTGTCACTGTTTCT CTTGGTGGAACAATTAGCATTTTCTCAGCTAGTGATCTTGATAAAAGTCCATTGAAAATAGCTGGTCATATGAAGAATGTTACTTCCTTATCCGTGCTTA AAAATGTCCCAAAGACTATACTGTCCAGCAGCTATGATGGCTTGATAATTAAATGGATTCAAGGCATTGGATACAGTAGCAAATTACAGAGGAAGGAGAA TACACAGATTAAATGCTTAGCTGCTGCTGAAGAAGAGATTGTCACATCTGGTTTTGATAATAAGATATGGAGAGTTCATTTGCTTGATGACCAATGTGGA GATGCAGATTCCATCGACGTGGGAAACCAACCAAAAGACATTAGTCTTGCCCTTCTCTGCCCTGAGCTTGCTTTGGTCACGATTGAGTCAGGTGTTGTCA TGCTTCGTGGTACAAAAGTTGTGTCAACCATCAATCTTGGCTTTGCTGTGACGGCATCTGCAATTGCACCTGATGGAAGTGAAGCAATCATAGGTGGGCT GGATGGAAAATTGCACATATATTCAGTCACAGGTGATACACTCACAGAAGAAGCAGTCCTTGAGAAACATCGTGGTGCTATCAGTGTCATCCGTTATTCT CCAGATGATTCAATGTTTGCATCTGGTGATTTAAATAGGGAAGCTGTAGTTTGGGATCGTGTCTCCAGAGAGGTGAAGCTTAAAAACATGTTGTACCACA CTGCCCGCATAAACTGTCTTGCTTGGTCTCCTGATAGCAGCATGGTTGCTACTGGATCGCTTGACAACTGTGTCATCATATATGAAATCGACAAGCCAGC ATCTAGTCGGATGACCATAAAGGGAGCTCACTTGGGTGGAGTTTATGGATTAGCTTTTGCTGATGATCATAGTGTAGTAAGTTCTGGTGAGGATGCTTGT GTTCGTGTTTGGAGGGTAAATCCACAGTGA
AA sequence Show only first row Show all	>Potri.012G049200.1 pacid=42783374 polypeptide=Potri.012G049200.1.p locus=Potri.012G049200 ID=Potri.012G049200.1.v4.1 annot-version=v4.1 MTELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQATVARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLT GRIDDLQWSPDGLRIVASGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKSSHRDHSNFVNCVRFSPDG SKFISVSSDKKGILFDGKTGEKIGQISSEDGHKGSIYAVSWSPDGKQVLTVSADKSAKVWEICDDGSGKLTKTLTSSGSGGVDDMLVGCLWQNDHLVTVS LGGTISIFSASDLDKSPLKIAGHMKNVTSLSVLKNVPKTILSSSYDGLIIKWIQGIGYSSKLQRKENTQIKCLAAAEEEIVTSGFDNKIWRVHLLDDQCG DADSIDVGNQPKDISLALLCPELALVTIESGVVMLRGTKVVSTINLGFAVTASAIAPDGSEAIIGGLDGKLHIYSVTGDTLTEEAVLEKHRGAISVIRYS PDDSMFASGDLNREAVVWDRVSREVKLKNMLYHTARINCLAWSPDSSMVATGSLDNCVIIYEIDKPASSRMTIKGAHLGGVYGLAFADDHSVVSSGEDAC VRVWRVNPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	0	1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	2.23	0.6939
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	3.46	0.6566
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	4.00	0.6792
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.010G170000 [exp]	4.47	0.6202	DIM.3
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	4.89	0.6542
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	10.39	0.5854
AT4G34590	bZIP	ATB2, ATBZIP11,...	Arabidopsis thaliana basic leu...		Potri.009G119700 [exp]	15.16	0.5901	Pt-GBF6.1
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	18.97	0.6290
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	19.23	0.6517
					Potri.004G135050 [exp]	29.39	0.6262

Compare expression of checked genes

Potri.012G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.