Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18080 831 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 793 / 0 BGLU43 beta glucosidase 43 (.1.2) AT1G26560 499 / 9e-174 BGLU40 beta glucosidase 40 (.1) AT5G54570 486 / 3e-168 BGLU41 beta glucosidase 41 (.1) AT2G44480 474 / 2e-163 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 469 / 4e-162 BGLU15 beta glucosidase 15 (.1) AT5G44640 468 / 2e-161 BGLU13 beta glucosidase 13 (.1) AT3G60130 460 / 3e-158 BGLU16 beta glucosidase 16 (.1.2.3) AT5G36890 458 / 4e-158 BGLU42 beta glucosidase 42 (.1.2) AT5G42260 455 / 2e-156 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041300 [exp] 969 / 0 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.008G094200 [exp] 531 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 513 / 3e-179 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.004G040700 [exp] 498 / 2e-173 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 496 / 2e-172 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 494 / 8e-172 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 494 / 1e-171 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.010G178800 [exp] 487 / 3e-169 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.001G409900 [exp] 487 / 8e-169 AT5G54570 791 / 0.0 beta glucosidase 41 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009644 [exp] 821 / 0 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031234 [exp] 528 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 525 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 521 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10009013 [exp] 520 / 0 AT3G18080 516 / 0.0 B-S glucosidase 44 (.1) Lus10037098 [exp] 509 / 1e-177 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 507 / 7e-177 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 504 / 8e-176 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031251 [exp] 499 / 2e-173 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10020232 [exp] 489 / 1e-169 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.012G049300.1 pacid=42782504 polypeptide=Potri.012G049350.1.p locus=Potri.012G049300 ID=Potri.012G049300.1.v4.1 annot-version=v4.1 ATGAGAGCTAAGGCATTGCCATTCTTGATATTCTGTCTCAGTATTGTTCAGTGTATCTCCCATGCAGCAGAATCCAATGGAGCCTCGGAGAAGCCTGAGA CCGTTAGTTTTGAAACAGCAGGAGGGCTGAGACACAGCTTCCCTAAGGGGTTTGTCTTTGGAACTGCTACTTCTGCTTATCAAGTTGAAGGCATGGCTGA GAAGGATGGTCGCGGGCCTAGCATTTGGGATGAATTTGTTAAAATTCCTGGGATCGTTGCCAATAATGCCACAGGGGAAGTGGCAGTGGACCAGTATCAC CACTACAAGGAAGATGTAGATATCATGAAAATGTTGAACTTCGATGCATACCGGTTCTCGATTTCATGGTCCAGAATTTTCCCTGATGGAACTGGAAAAG TGAATTGGTTGGGAGTTGCATACTACAATAGGTTGATCAACTACATGATCGAAAAAGGCATTACTCCATATGCGAATCTTTATCACTATGATCTTCCCCT AGCACTAGAGAAGAAGTATAAAGGATTGCTGAGTTACCAAGTAGTGAAAGACTTTGCCGATTATGCAGACTTCTGTTTCAAGACCTTTGGAGACCGAGTG AAGAATTGGATGACATTCAATGAACCCAGAGTGGTAGCTGCACTTGGATATGATAATGGATTATTTGCTCCTGGCAGGTGTTCCAAAGCATTCGGGAACT GTACAGCCGGCGACTCTGCAACAGAGCCTTATATTGTTGCTCATCATTTGATTTTATCTCATGCAGCCGCAGTTCAGAGATACCGCGAGAAGTATCAAGA AAAACAAAAGGGAAGGATTGGGATTCTCTTGGATTTTGTTTATTACGAACCTCTTACCAGCTCAAAAGCTGACAACTTGGCAGCTCAAAGAGCAAGAGAC TTTCACATTGGATGGTTTATCCATCCTATTGTGTATGGTGAATATCCAAAAACAATGCAAAATATTGTCGGGAATAGACTACCCCAGTTTACAAAAGAAG AAGTTAAGATGGTGAAGGGCTCAATGGATTTTGTGGGCATCAACCAATATACAACTTTCTACATGTATGATCCTCATCAGCCTAAACCAAAGTACTTGGG CTACCAGCAAGATTGGAATGTTGGATTTGCTTATAAGAAGAATGGAGTGCCAATTGGTCCAAGAGCAAATTCTAATTGGCTTTACAATGTACCATGGGGT ATGTACAAGGCTGTGATGTACATAAAAGAGCGCTATGGAAACCCTACAATTATACTATCTGAAAATGGGATGGATGATCCTGGTAATTTCACGCGTTCGA AAGCATTGCACGACACCACTAGAGTTGGCTACTTTAAGGCCTATTTGACTCAGCTGAAGAAGGCAGCTGATGAAGGAGCCAATTTAGCTGGTTACTTTGC ATGGTCATTGCTTGACAACTTTGAATGGAGGTCAGGCTACACTTCAAGGTTCGGCATAGTATATGTTGATTACACCAACCTAAAGAGGTACCCCAAAATG TCTGCCTATTGGTTCAAGAAACTACTGGAGCGGAACAAACACTAA
AA sequence Show only first row Show all	>Potri.012G049300.1 pacid=42782504 polypeptide=Potri.012G049350.1.p locus=Potri.012G049300 ID=Potri.012G049300.1.v4.1 annot-version=v4.1 MRAKALPFLIFCLSIVQCISHAAESNGASEKPETVSFETAGGLRHSFPKGFVFGTATSAYQVEGMAEKDGRGPSIWDEFVKIPGIVANNATGEVAVDQYH HYKEDVDIMKMLNFDAYRFSISWSRIFPDGTGKVNWLGVAYYNRLINYMIEKGITPYANLYHYDLPLALEKKYKGLLSYQVVKDFADYADFCFKTFGDRV KNWMTFNEPRVVAALGYDNGLFAPGRCSKAFGNCTAGDSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYEPLTSSKADNLAAQRARD FHIGWFIHPIVYGEYPKTMQNIVGNRLPQFTKEEVKMVKGSMDFVGINQYTTFYMYDPHQPKPKYLGYQQDWNVGFAYKKNGVPIGPRANSNWLYNVPWG MYKAVMYIKERYGNPTIILSENGMDDPGNFTRSKALHDTTRVGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTNLKRYPKM SAYWFKKLLERNKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	5.47	0.7395	PIN7,Pt-PIN1.2
AT5G65740			zinc ion binding (.1.2.3.4)		Potri.007G008300 [exp]	11.18	0.7579
AT4G24900			unknown protein		Potri.015G096700 [exp]	12.88	0.7859
AT2G39920			HAD superfamily, subfamily III...		Potri.010G193500 [exp]	20.97	0.7515
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	22.80	0.7451
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.006G270700 [exp]	25.51	0.6579
AT3G62880		ATOEP16-4	Mitochondrial import inner mem...		Potri.014G128900 [exp]	26.83	0.7308
AT1G68500			unknown protein		Potri.010G124700 [exp]	27.82	0.7473
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	29.29	0.7416
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G307200 [exp]	29.59	0.7409	Pt-MSACAD1.1,CADL10

Compare expression of checked genes

Potri.012G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.