Plant FIBer expression Database

Potri.012G049500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73680 1007 / 0 ALPHADOX2 ,ALPHA DOX2 alpha dioxygenase (.1.2)
AT3G01420 813 / 0 PADOX-1, ALPHA-DOX1, DIOX1 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G106400
[exp]
862 / 0 AT3G01420 925 / 0.0 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039436
[exp]
818 / 0 AT3G01420 905 / 0.0 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0617 Peroxidase PF03098 An_peroxidase Animal haem peroxidase
Representative CDS sequence
>Potri.012G049500.1 pacid=42784228 polypeptide=Potri.012G049500.1.p locus=Potri.012G049500 ID=Potri.012G049500.1.v4.1 annot-version=v4.1
ATGGCATTCTCTCTATCCTCTTCCTCCTTCATTCATCCTCAGCTAAGGCATATTGTTTGCAAGATGAATCTTTTTGACACTCTGTTGTTCTTTGTTATTC
ATTTCGTGGACAAGCTGGGGTTATGGCACAGATTACCAGTACTTTTGGGACTTGCTTATATGGCAATTAGAAGGCATCTGCACCAACGTTACAATCTCTT
GCATGTCGGAGGAATCAATGGTCAGAAATATGAGACTGAAGAGTTTTCTTATCGAACGGCTGATGGAAAATGCAATCACCCTAGTGATGACATTATTGGA
AGCCAAGGAACTTTTTTTGGTCGCAACATGCTCCCAGCAAATTCAAGATATGGGTTGCTGGATCCTCATCCAACAGTTGTGGCCAATAAGCTTTTGGCAA
GGAATAAGTTCATAGACAATGGGAAGCAATTCAACATGATAGCCTGCTCATGGATACAATTCATGATTCATGACTGGATTGATCATATGGAGGACACCCA
ACAGGTTGAACTTAAAGCACCTGATAAGATAGCAGATGGGTGTCCATTGAAGTCATTCAAATTCTACAAGACAAAGAAAGTTTCAACAGGTTCACCATAC
ATGAAGACTGGATCTCTAAACACAAGGACTCCTTGGTGGGATGGAAGTGTAATTTATGGGAATAATGAGGATGGGATGAGAAAAGTTAGGGAATTCAAAG
ATGGGAGATTAAGGATTGCAGGAGATGGACTTCTTGAGCACGATGAGAAAGGGATTCCCATCTCAGGAGACGTCAGGAATTGCTGGGCAGGCTTTTCTTT
ATTACAAGCCTTATTTGTCAAAGAACATAATGCTGTCTGTGACATGCTTAAAGAAAATTACCCTGATTTTGATGATGAAAAGCTGTATCGACATGCCAGA
TTGGTTACTTCAGCTGTCCTTGCCAAAATTCACACCATTGATTGGACTGTAGAACTCCTTAGGACTGATACTCTCCTTGCAGGGATGAGGATCAACTGGT
ATGGATTTTTGGGGAAGAAAATTAAGGATTTATTTGGGCACTTTGGTGGTCCAGTACTGAGTGGATTGGTTGGTCTTAGGCGACCAAGAGATCATGGAGT
TCCCTATTCACTGACCGAAGAGTTCGTGAGTGTCTACAGAATGCATTCACTACTGCCTGAAAAACTCATCCTGAGAGACATCCATTCCACAGCTTCAGAA
TATGAATGCCCTCCAGTAGTTGAAGAGGTGCCAATGAGGGAGATGGCTGGAAAAGATGGGGAGAGAAGATTGTCAGAATTAGGAATGGAGCAGATGCTGG
TATCGATGGGTCATCAGGCATGTGGAGCTGTCAAATTGTGGAACTATCCATCATGGATGAGAAACCTTGTTGCTCATGATATTAATGGAGAAGACAGGCC
AGATCAAGTTGATATGGCTGCTATGGAAATTTATAGAGATAGGGAGAGAGGAGTTGCTCGTTACAACGAATTCAGAAGGAACTTACTGATGATTCCGATT
AGCAACTGGGAAGATTTGACAGATGATGAAGAGGTTATAGAAGCTCTTCGCGATGTGTATGGAAATGATGTCGAAAAACTAGATTTGCTGATAGGCTTAC
ATGCAGAAAAGAAAATCAAAGGCTTTGCGATAAGCGAGACTGCTTTCTTCATCTTTTTACTTATTGCCTCGAGGAGGCTAGAAGCTGATCGTTTCTTCAC
CACCAATTTCAACTCTCGAACCTACACAGAGAAAGGCCTGGAATGGGTTAACAAGACAGAGACCCTTAAAGATGTGATCGATCGCCATTTCCCTGGTATG
ACAAAGAAATGGATGAAGTGTACGAGTGCATTCTCAGTCTGGGATTCAGAACCTAATCAAACAACCTACATTCCCCTGTATCTAAGACCAGCCCCATGA
AA sequence
>Potri.012G049500.1 pacid=42784228 polypeptide=Potri.012G049500.1.p locus=Potri.012G049500 ID=Potri.012G049500.1.v4.1 annot-version=v4.1
MAFSLSSSSFIHPQLRHIVCKMNLFDTLLFFVIHFVDKLGLWHRLPVLLGLAYMAIRRHLHQRYNLLHVGGINGQKYETEEFSYRTADGKCNHPSDDIIG
SQGTFFGRNMLPANSRYGLLDPHPTVVANKLLARNKFIDNGKQFNMIACSWIQFMIHDWIDHMEDTQQVELKAPDKIADGCPLKSFKFYKTKKVSTGSPY
MKTGSLNTRTPWWDGSVIYGNNEDGMRKVREFKDGRLRIAGDGLLEHDEKGIPISGDVRNCWAGFSLLQALFVKEHNAVCDMLKENYPDFDDEKLYRHAR
LVTSAVLAKIHTIDWTVELLRTDTLLAGMRINWYGFLGKKIKDLFGHFGGPVLSGLVGLRRPRDHGVPYSLTEEFVSVYRMHSLLPEKLILRDIHSTASE
YECPPVVEEVPMREMAGKDGERRLSELGMEQMLVSMGHQACGAVKLWNYPSWMRNLVAHDINGEDRPDQVDMAAMEIYRDRERGVARYNEFRRNLLMIPI
SNWEDLTDDEEVIEALRDVYGNDVEKLDLLIGLHAEKKIKGFAISETAFFIFLLIASRRLEADRFFTTNFNSRTYTEKGLEWVNKTETLKDVIDRHFPGM
TKKWMKCTSAFSVWDSEPNQTTYIPLYLRPAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73680 ALPHADOX2 ,ALPH... alpha dioxygenase (.1.2) Potri.012G049500
[exp]
0 1
AT1G71691 GDSL-like Lipase/Acylhydrolase... Potri.013G102500
[exp]
1.41 0.9969
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008100
[exp]
2.44 0.9968
AT3G55090 ABCG16 ATP-binding cassette G16, ABC-... Potri.008G047900
[exp]
3.16 0.9890
AT5G15310 MYB ATMYB16, ATMIXT... myb domain protein 16 (.1.2) Potri.008G089700
[exp]
4.00 0.9941
AT1G68620 alpha/beta-Hydrolases superfam... Potri.003G192600
[exp]
4.89 0.9861
AT5G09970 CYP78A7 "cytochrome P450, family 78, s... Potri.002G060900
[exp]
5.09 0.9832
AT3G11480 BSMT1, ATBSMT1 S-adenosyl-L-methionine-depend... Potri.019G022400
[exp]
6.48 0.9875
AT5G67060 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-hel... Potri.002G125000
[exp]
6.63 0.9771
AT1G14820 Sec14p-like phosphatidylinosit... Potri.010G105400
[exp]
8.71 0.9794
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.011G140600
[exp]
9.16 0.9871

Potri.012G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.