Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PP2.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48635 440 / 1e-154 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 424 / 2e-148 PEX3-1 peroxin 3-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041700 [exp] 685 / 0 AT1G48635 439 / 1e-154 PEROXIN 3-2, peroxin 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041998 [exp] 447 / 3e-157 AT1G48635 436 / 2e-153 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009676 [exp] 441 / 3e-155 AT1G48635 404 / 2e-140 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009038 [exp] 416 / 3e-139 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018002 [exp] 196 / 6e-61 AT1G48635 201 / 2e-63 PEROXIN 3-2, peroxin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [poplar] [flax] Peroxin-3 Peroxin-3
Representative CDS sequence Show only first row Show all	>Potri.012G049700.1 pacid=42783148 polypeptide=Potri.012G049700.1.p locus=Potri.012G049700 ID=Potri.012G049700.1.v4.1 annot-version=v4.1 ATGCTTTCTTTAAGGAATTTTTGGAGAAGGCATAGGAGTAAAATTCTTATTACAGCAGGTGTTTTAGGAAGTGGGTATTTTCTTTATAGACTATACAATG CTCACGAACAGAGGCTCGCTGATCTGGAAAGAGAACTTGCTCGCCAACGGGCAAATGATGAACTCATCAAGGCCCAATTGCAAGCCCATTTCGAGAATGT GCAATTAATAGCTGATACAACAACATTGCCTCATGCAATGCAATATTTAAGAAGTAGGATAGCGGAAGAGTTGGACCTTTCACAGCTCACTGAAAGGCTA CAGAAAGGGAAGGGTAAGCCATACACGCTTACCTCTTCAGAGAAACTTGAACTGTGGGACAGACTCAAAATCCTAAGTTTCACACAAATGGTGGTGTCGC TGTGGGCTGTGACAATACTTAGCTTATATATCAAAGTTCAAGTAAATATTCTAGGAAGACATTTGTATATTGATACTGCACGTGGCCTTGGAAGCTCACT TTTACTTGAGAATGTTGATCTCATTGACAGGGATGACCAGCAAAATTTTTTGGCGGGTGCTGATTTTCTTGCTAATAATGGCCTGCTGGCATTGATTTCA AATATCCAGGCTGTGGTAACAGAAGTTATTGAGGGAAAGAAGTTGATTGATTTGTTCAACACCACATCTTTTCACGAAACTGTCATGCAAATACTTGACA AGTTTATGAGCGTGGGAAGTCTACATCAATGGATAGATTACTTAATGCCTGAAGATAGTGGGCACTACAAACTAGGCACAAGCTCCAGCATTGACGACAC GGTCCTTCCTAATAGCACAAATTTTGATCAGCTTATGGTGGAGGCACGAACAGTGCTATCAAGTGCTGAATTTGGTAAAATCATGGGAATATCTTTGAAA GTGGCAGTGGATGCACTGGTGGAGGATATGGAAGCTCAGTGTCAGTCCACTGGGGCCAGTCTAACATCGGGGATGCCACTGGCAAAACTTCTATCACGAG TTATGCAGATGGTACCATCGTTACTCCGTGAAGCAAGCCAAAACCAGTTTATCAAAATCATCCGGACTGTACCAGAAGTTGAACTGTTCTTCACTCTCCT CTATGCAAACAACCTTGTAGACTAG
AA sequence Show only first row Show all	>Potri.012G049700.1 pacid=42783148 polypeptide=Potri.012G049700.1.p locus=Potri.012G049700 ID=Potri.012G049700.1.v4.1 annot-version=v4.1 MLSLRNFWRRHRSKILITAGVLGSGYFLYRLYNAHEQRLADLERELARQRANDELIKAQLQAHFENVQLIADTTTLPHAMQYLRSRIAEELDLSQLTERL QKGKGKPYTLTSSEKLELWDRLKILSFTQMVVSLWAVTILSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLIDRDDQQNFLAGADFLANNGLLALIS NIQAVVTEVIEGKKLIDLFNTTSFHETVMQILDKFMSVGSLHQWIDYLMPEDSGHYKLGTSSSIDDTVLPNSTNFDQLMVEARTVLSSAEFGKIMGISLK VAVDALVEDMEAQCQSTGASLTSGMPLAKLLSRVMQMVPSLLREASQNQFIKIIRTVPEVELFFTLLYANNLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.012G049700 [exp]	0	1	Pt-PP2.6
AT3G07568			unknown protein		Potri.014G197400 [exp]	6.24	0.6750
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	20.73	0.6673
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	36.75	0.6562
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.017G066900 [exp]	43.82	0.6234
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	64.57	0.6288
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.007G026800 [exp]	67.88	0.6140
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	80.96	0.5859
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.001G314200 [exp]	97.31	0.5709	Pt-B5.3
AT1G04960			Protein of unknown function (D...		Potri.002G219300 [exp]	144.92	0.5644
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	169.65	0.5575

Compare expression of checked genes

Potri.012G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.