Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18210 533 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G22950 445 / 1e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48740 377 / 9e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43660 359 / 1e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48700 320 / 1e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G47940 72 / 9e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043100 [exp] 716 / 0 AT3G18210 554 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G125800 [exp] 503 / 7e-179 AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G117951 [exp] 40 / 0.0003 AT1G22950 43 / 9e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031064 [exp] 436 / 6e-152 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10035445 [exp] 356 / 4e-114 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000171 [exp] 185 / 8e-57 AT1G22950 171 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G051200.4 pacid=42784247 polypeptide=Potri.012G051200.4.p locus=Potri.012G051200 ID=Potri.012G051200.4.v4.1 annot-version=v4.1 ATGTCAGGAGATCGCCGGGAATCGCCTCCGGTGACCGCAGGAGGAAACGGAGTGGTGTTACAGGATAAAAAAACAGCTCCAGTGATGGTGCCGAGTCAGA GGCTGAGATTACACCCTAACAAGGATCATATGCCAGAGAGCTATGAAGATCTACAACTGGACTTCAGTCCTTCGGTTTTTAGGTCGCTGGAGAAATACTT GCCGCCTAATATGCTTAGTGATAGCAGAGAAGAGAAAGTGAAGTTCATGAGAGATATTCTATTGAAGTATTTGCCTCATGGAGAGCGAACCAGAGCACAG AAACATGGAGAATACAGGCAGAAGATAATATCACATTATAAGCCTTTGAAAAGAGAGTTATACTCAATGCACCCTGTAACTTTCTTTGTCCCGTCCTTTA TGAAAGCAATCAATGATAACACAGAAGAAAGCCTTAGAAGCATCATATCAGAACCCTCTCCTGGCGTGCTCACATTTGAGATGCTTCAGCCACGCTTTTG CGAATTACTAGTAGCAGAGGTTGAAAATTTTGAGGCATGGGTTAATGATACAAAATTTCGAGTCATGCGACCAAATACGATGAACAAATATGGAGCTGTT CTTGATGATTTTGGCCTTGAAACAATGCTTGACAAGCTTATGGATGGTTTTATCCGTCCTATATCTAAAGGTGATGCGTATGTGCTGATACCAGATAAGC TGCATCATATGTTCTCTGGAAGTTTAATCTTTTTCTGTATTCTAATTCGTCAAAATAACACAGATTATATGATCATTTTCCCTGCCTCCCTCTCCTGTGC AGTTTTTTTTCGTGAAGTTGGTGGGGCAACTCTGGATTCTCATCATGGTTTTGTTGTTGAATATGGCAAAGATTGGGATGTTGACTTGGGCTTTCACGTG GATGACTCTGAAGTAACTTTGAATGTTTGCTTGGGCAAGCAATTTTCTGGAGGAGAATTGTTTTTCCGGGGCACACGATGTGATAAACATGTAAATACTG GAAGTCAGCCAGAGGAAATTTTTGATTATTCTCATGTTCCTGGTGGAGCTGTGCTTCATCTTGGTCGTCATAGGCATGGTGTTAGGGCCACAACATCTGG TCATAGGATCAATTTACTCCTGTGGTGCAGAAGTTCGGTCTTCAGAGAGATCAGGAAATATCAAAAAGATTTCTCGAGTTGGTGTGGAGAGTGCGCACGA GAAAAGAAGGGAAGGCAGCGAGCATTCATTGCTGCCACTAAATCGGAGTTACTCAGGCAGGATGGTGAGTCCGTAGCGTGA
AA sequence Show only first row Show all	>Potri.012G051200.4 pacid=42784247 polypeptide=Potri.012G051200.4.p locus=Potri.012G051200 ID=Potri.012G051200.4.v4.1 annot-version=v4.1 MSGDRRESPPVTAGGNGVVLQDKKTAPVMVPSQRLRLHPNKDHMPESYEDLQLDFSPSVFRSLEKYLPPNMLSDSREEKVKFMRDILLKYLPHGERTRAQ KHGEYRQKIISHYKPLKRELYSMHPVTFFVPSFMKAINDNTEESLRSIISEPSPGVLTFEMLQPRFCELLVAEVENFEAWVNDTKFRVMRPNTMNKYGAV LDDFGLETMLDKLMDGFIRPISKGDAYVLIPDKLHHMFSGSLIFFCILIRQNNTDYMIIFPASLSCAVFFREVGGATLDSHHGFVVEYGKDWDVDLGFHV DDSEVTLNVCLGKQFSGGELFFRGTRCDKHVNTGSQPEEIFDYSHVPGGAVLHLGRHRHGVRATTSGHRINLLLWCRSSVFREIRKYQKDFSSWCGECAR EKKGRQRAFIAATKSELLRQDGESVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.012G051200 [exp]	0	1
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	2.00	0.8584	Pt-MRE11.1
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	3.46	0.8410
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.008G064800 [exp]	4.00	0.8322
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	5.74	0.8301
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	5.91	0.8335	Pt-ALA5.2
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.014G004000 [exp]	5.91	0.8529
					Potri.004G111166 [exp]	7.74	0.8215
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	8.71	0.8146
					Potri.004G012000 [exp]	10.00	0.8641
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.010G023500 [exp]	10.09	0.7690

Compare expression of checked genes

Potri.012G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.