Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18190 942 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 288 / 5e-91 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 245 / 2e-74 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 239 / 4e-72 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 236 / 1e-70 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 227 / 3e-67 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 220 / 7e-65 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 164 / 2e-44 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 163 / 7e-44 TCP-1/cpn60 chaperonin family protein (.1) AT3G14270 52 / 7e-07 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042600 [exp] 992 / 0 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 292 / 2e-92 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 287 / 1e-90 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 262 / 6e-81 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 261 / 1e-80 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 249 / 1e-75 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 248 / 2e-75 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 243 / 2e-73 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 237 / 3e-71 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008670 [exp] 936 / 0 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10026151 [exp] 744 / 0 AT3G18190 740 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10011401 [exp] 290 / 1e-91 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 289 / 3e-91 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 287 / 2e-90 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10012380 [exp] 263 / 4e-81 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 258 / 2e-79 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 257 / 4e-79 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 255 / 4e-78 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 249 / 9e-76 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.012G051300.1 pacid=42784376 polypeptide=Potri.012G051300.1.p locus=Potri.012G051300 ID=Potri.012G051300.1.v4.1 annot-version=v4.1 ATGGCAGCTGTCTCCGCTCCTAGATCTTCCAAAACTGAGTCCTACATCGACAACAAGCGGAAAGAAGACATACGCCATGCCAACATCAAGGCGGCGTGCG CGGTGGCTGACGCCATCAGAACCAGTCTTGGTCCTAAAGGAATGGACAAAATGATTTCAACGGCGAGCGGCGAAGTCATCATCACCAACGACGGCGCCAC GATTGTTAACAAGATGGAGGTTCTTCAACCTGCTGCGAAGATGCTCGTTGAACTATCTAAATCTCAGGACACCGCTGCTGGTGACGGCACCACCACCGTC GTTGTCATCGCCGGATCGTTGCTTAAGCAGTGCCTTACTCTCCTCTCCTCTGGTATCCACCCTACTGTTATCTCGGATTCATTGCATAAAGCTTCAATTA AAGCTGTCGATGTTTTAACTGCAATGGCTGTGCCGTTAGAGTTAACGGACCGTGACTCGTTAATTAAATCCGCTAGTACGTCATTAAACAGTAAAGTAGT TAGCCAGTATTCATCATTGCTAGCTCCCTTAGCCGTTGATGCTGTTTTGTCTGTTGTGGATCCTGCGAAGCCTGATTTAGTTGATCTTAGGGATATTAAG ATAGTGAAAAAGCTTGGTGGAACCGTGGATGATACGGAGATGGTTAGGGGTTTGGTTTTTGATAAGAAAGTGAGTCATGCTGCAGGTGGGCCTACACGTG TTGAGAATGCGAAGATTGCAGTTATCCAGTTTCAGATTTCCCCACCAAAGACTGATATTGAGCAGAGTATTGTGGTTTCTGATTATGCACAAATGGACAG GATTCTGAAGGAAGAGAGAAATTATATTTTGGGAATGATTAAGAAGATTAAGGCTACTGGGTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGAT GCGGTGACAGATTTGTCTTTGCATTATTTGGCAAAAGCGAAGATTCTGGTGATCAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACTAAGACTTTGA ACTGTTTGCCTATTGCAAATATTGAGCATTTCAAAGAGGAAAAGCTGGGTTATGCCAATCTTGTTGAGGAGGTTTCACTTGGAGATGGGAAGATTGTGAA GATTACTGGGATTAAGGATATGGGAAGGACTACCACGGTACTTGTACGTGGGTCTAATCATTTGGTTCTTGATGAGGCAGAGCGGAGTTTGCACGATGCA TTGTGTGTCGTTAGGTGTTTGGTGAGTAAGCGTTTTTTGATTGCTGGTGGTGGGGCTCCGGAGATTGAGCTGTCACGGCAGCTTGGGGCATGGTCAAAGG TGCTTCACGGGATGGAAGGATACTGTGTGAAGTCATTTGCAGAGGCACTTGAGGTCATTCCATATACTTTAGCAGAGAATGCAGGATTGAACCCAATTAC TATTGTGACTGAACTGAGGAATAGGCATGCTCAAGGAGAGATCAATACAGGAATCAATGTGAGGAAGGGGCAGATCACGAATATTTTGGAGGAGAACGTG GTGCAGCCTCTGCTTGTCAGTACAAGTGCCATGACACTGGCAACAGAGTGTGTCCGGATGTTATTGAAGATCGATGACATTGTTACTGTCAGGTAG
AA sequence Show only first row Show all	>Potri.012G051300.1 pacid=42784376 polypeptide=Potri.012G051300.1.p locus=Potri.012G051300 ID=Potri.012G051300.1.v4.1 annot-version=v4.1 MAAVSAPRSSKTESYIDNKRKEDIRHANIKAACAVADAIRTSLGPKGMDKMISTASGEVIITNDGATIVNKMEVLQPAAKMLVELSKSQDTAAGDGTTTV VVIAGSLLKQCLTLLSSGIHPTVISDSLHKASIKAVDVLTAMAVPLELTDRDSLIKSASTSLNSKVVSQYSSLLAPLAVDAVLSVVDPAKPDLVDLRDIK IVKKLGGTVDDTEMVRGLVFDKKVSHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYAQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRD AVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFKEEKLGYANLVEEVSLGDGKIVKITGIKDMGRTTTVLVRGSNHLVLDEAERSLHDA LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWSKVLHGMEGYCVKSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINTGINVRKGQITNILEENV VQPLLVSTSAMTLATECVRMLLKIDDIVTVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	0	1
AT3G12390			Nascent polypeptide-associated...		Potri.003G190800 [exp]	3.00	0.9558
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	3.16	0.9418
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	6.92	0.9269
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	8.66	0.9246
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	10.48	0.9324	APFI.1
AT2G35790			unknown protein		Potri.010G219000 [exp]	10.81	0.9280
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.003G102800 [exp]	13.30	0.9384	ATBBC1.3
AT1G78922			unknown protein		Potri.007G001650 [exp]	13.49	0.9246
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	14.14	0.9306	Pt-ADR12.2
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	15.49	0.9360

Compare expression of checked genes

Potri.012G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.