Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) AT3G18180 437 / 4e-149 Glycosyltransferase family 61 protein (.1) AT2G41640 256 / 1e-78 Glycosyltransferase family 61 protein (.1.2) AT3G10320 253 / 2e-77 Glycosyltransferase family 61 protein (.1) AT3G57380 244 / 8e-74 Glycosyltransferase family 61 protein (.1) AT2G03370 213 / 1e-62 Glycosyltransferase family 61 protein (.1) AT2G03360 211 / 6e-62 Glycosyltransferase family 61 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042300 [exp] 932 / 0 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 735 / 0 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.006G048500 [exp] 249 / 2e-75 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 249 / 2e-75 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 224 / 7e-67 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 208 / 1e-60 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 200 / 9e-58 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016707 [exp] 474 / 9e-163 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 466 / 3e-159 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 375 / 7e-124 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10042956 [exp] 359 / 5e-118 AT3G18180 283 / 6e-91 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 317 / 3e-104 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1) Lus10032459 [exp] 326 / 1e-103 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1) Lus10032457 [exp] 313 / 2e-102 AT3G18180 248 / 1e-78 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 248 / 3e-75 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 247 / 9e-75 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 244 / 3e-73 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [poplar] [flax] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Potri.012G051500.1 pacid=42783287 polypeptide=Potri.012G051500.1.p locus=Potri.012G051500 ID=Potri.012G051500.1.v4.1 annot-version=v4.1 ATGATTTATGATACCGTGCTTGCTAGAAGCTTCAGCAAGCATGAGCAAAAGAGGTTGGGATACTGGGCATTGATTGCTTGCTTGTTCATTGTGTTGAGTT TCTTCACCATCTTTAAACCTTACTTGGGCCCTCTACAAGTTTTGAATTTGAGGTTATCAATGGGAGAAGACGAGAAACTTCATCTTTATAATGATACAAC CAGCTCCAGGCTGATAGCCAAAGAAGAAACTATAGACAGTACTTTGATTGTCAATGATAAAAGAAGCTCCCAAGAAGAAGCAGAAATTATGAGTGGGGCA TTAATTGTCAATGATACAGATAGAACTCATGAAGAAGCAGAAAGTAGTGTTGCAGAAAGTATAATGAATATTTCTTCAATTGTCAATGGTACGAGCAACT CTCAAGAGGTATTTAGGGAAAGTGTTACACAGAATGTGAGGACCATTGATACAATTAGTAGCTCTCCACAAAAAGTCAAAGAAATTACAAGCAAGGATGA TTTCATGGTCAACAATACAAACATCTCTCTTCCAAAAGCAACAGATGCAGATGCTGTAACAAAGAACAACAAAATGGAGCCTCTATGCACTATCATGGGT AGATCAGATTTCTGCGAGATAAAAGGGGACATCAGGATTGATGGAAGTTCCTACACTGTCTTTATTGTTTCATCTGAGACTGATATCCTGGCAGCAGAGA ATACTTCATGGAGGATTAGACCTTATGCGCGAAAAGGTGACCAGACGGCAATGGGCGCGGTTAGGGAATGGACACTAAAACTTGTGGCTGGTGGTTCAGA TATCCCTCAATGCACTCAGAATCATAGTGTTCCGGGGATCCTTTTTTCGGCTGGTGGATATGCGGGAAACCATTTTCATGCCTTCACTGACATAATTGTT CCCCTATTCTCGACTGCTCGACCCTATAATGGAGAAGTACAGTTTATTATCACCAACGGTTGGTCTGCGTGGATCGCAAAGTTCAAAACAATACTGAAAG CACTGTCTAGATATGAGCTCATCAATATTGATAATAGAAAAGATATACATTGCTTTGGTAGCATGACAGTCGGCCTTAAACGTCCATCCTACAAAGAGCT CAGTATTGATCCTTCAAAGTCTCCATATTCAATCAAAGACTTCAGGCAGTTCCTGAGAAGTTCCTATTCTTTAAAGAAAACAAGGGCAATTAAAATCAGG GATGGGATGAAGAAAAGGCCGAGGCTTCTAATCATTTCAAGAAAAAGATCGCGAGCATTTACAAATGTTGGTGAAATTGTTAACATGGCTGAGAGATTGG GTTTCAGAGTAGTTGTTGCAGAACCTGGCATGGATGTATCAGGATTTTCTCAGATCATTAATTCCTGTGATGTGGTGATGGGAGTTCATGGTGCTGGGCT AACCAACATTGTTTTCCTTCCTGAAAAGGCTGTCTTAATCCAAGTAATTCCCTTTGGAGGAGCAGAATGGCTTTCAAAAACTTTCTTTGAAGAGCCTGCA AAGGACATGAACATAAGGTACTTGGACTATAAAATCAGGGTAGAAGAGAGCACTTTGATACAGCAATACCCAGCTGACCATGCAGTTTTGAGGGATCCCT CTGTAATTGGGAAACAGGGTTGGCTTGCATTTCAGTCAATATATTTACAGAAGCAAAATGTAACGATAGATGTGAATAGGTTTAGACCCACTTTGGTAAA AGCCTTGGAGCTTTTGCATCAGTGA
AA sequence Show only first row Show all	>Potri.012G051500.1 pacid=42783287 polypeptide=Potri.012G051500.1.p locus=Potri.012G051500 ID=Potri.012G051500.1.v4.1 annot-version=v4.1 MIYDTVLARSFSKHEQKRLGYWALIACLFIVLSFFTIFKPYLGPLQVLNLRLSMGEDEKLHLYNDTTSSRLIAKEETIDSTLIVNDKRSSQEEAEIMSGA LIVNDTDRTHEEAESSVAESIMNISSIVNGTSNSQEVFRESVTQNVRTIDTISSSPQKVKEITSKDDFMVNNTNISLPKATDADAVTKNNKMEPLCTIMG RSDFCEIKGDIRIDGSSYTVFIVSSETDILAAENTSWRIRPYARKGDQTAMGAVREWTLKLVAGGSDIPQCTQNHSVPGILFSAGGYAGNHFHAFTDIIV PLFSTARPYNGEVQFIITNGWSAWIAKFKTILKALSRYELINIDNRKDIHCFGSMTVGLKRPSYKELSIDPSKSPYSIKDFRQFLRSSYSLKKTRAIKIR DGMKKRPRLLIISRKRSRAFTNVGEIVNMAERLGFRVVVAEPGMDVSGFSQIINSCDVVMGVHGAGLTNIVFLPEKAVLIQVIPFGGAEWLSKTFFEEPA KDMNIRYLDYKIRVEESTLIQQYPADHAVLRDPSVIGKQGWLAFQSIYLQKQNVTIDVNRFRPTLVKALELLHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	0	1
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148498 [exp]	6.70	0.9016
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.011G094400 [exp]	7.07	0.9157
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	8.36	0.8784
AT1G03820			unknown protein		Potri.007G137001 [exp]	8.48	0.9053
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.018G096007 [exp]	9.69	0.9085
AT3G45400			exostosin family protein (.1)		Potri.019G044600 [exp]	10.24	0.8878
AT2G23450			Protein kinase superfamily pro...		Potri.002G130600 [exp]	10.48	0.8955
AT4G08330			unknown protein		Potri.014G197000 [exp]	11.48	0.8660
AT1G29690		CAD1	constitutively activated cell ...		Potri.006G107900 [exp]	15.77	0.8305
AT1G28400			unknown protein		Potri.011G057500 [exp]	16.94	0.8969

Compare expression of checked genes

Potri.012G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.