Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 643 / 0 MATE efflux family protein (.1) AT2G34360 590 / 0 MATE efflux family protein (.1) AT1G73700 587 / 0 MATE efflux family protein (.1) AT1G71140 447 / 5e-154 MATE efflux family protein (.1) AT1G15150 421 / 1e-143 MATE efflux family protein (.1) AT1G15160 412 / 5e-140 MATE efflux family protein (.1) AT1G15170 410 / 2e-139 MATE efflux family protein (.1) AT1G15180 399 / 3e-135 MATE efflux family protein (.1.2) AT2G04040 386 / 5e-130 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04070 384 / 1e-129 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170900 [exp] 615 / 0 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 613 / 0 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 598 / 0 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 472 / 1e-163 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 452 / 1e-155 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 449 / 2e-154 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 434 / 5e-149 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 424 / 7e-145 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094900 [exp] 415 / 2e-141 AT1G71140 503 / 3e-176 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041994 [exp] 657 / 0 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017998 [exp] 615 / 0 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 561 / 0 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10001318 [exp] 534 / 0 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 489 / 3e-170 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10029694 [exp] 445 / 4e-153 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 443 / 3e-152 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 441 / 2e-151 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 428 / 2e-146 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10017949 [exp] 419 / 1e-142 AT5G52450 402 / 2e-136 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.012G051900.2 pacid=42783192 polypeptide=Potri.012G051900.2.p locus=Potri.012G051900 ID=Potri.012G051900.2.v4.1 annot-version=v4.1 ATGGAGAGAGAGCAGCAAAGTTTGTCTCTTAATACACCTTTATGTGAAGGAAACGGTGTCGGACTTTACGAAGAAAGAAACCAAGAAAGGGGTATCAGCA AGAAGGAGATTCTTGAAGAAGTGAAAAGGCAGCTATGGCTAGCAGGTCCTTTAATATCTGTGAGTCTGTTGCAATATTGTATACAAATGATTTCTGTGAT GTTTGTAGGTCATCTTGGTGAGTTAAGCTTGTCTGGTGCTTCAATGGCCACTTCCTTTGCGAGTGTCACTGGTTTCAGCTTGTTGTTGGGAATGGCAAGT GCGCTTGATACATTTTGCGGGCAGGCATATGGAGCAAGGCAGTTTCATATGCTCAGCATACACATGCAGAGAGCCATGGTTGTTCTTTTACTTGTTAGCA TACCCCTTGCCATCATCTGGGCAAACACAAGACCTATCCTAATTGCCTGTGGCCAACAAAAAGATATAGCAGAGGAAGCTGGACTGTATGCTCGTTTCAT GATCCCAAGCCTTTTTGCATATGGTCTTCTTCAATGCCTGGTCAAATTCTTACAGACTCAGAACATAGTATTTCCGATGATGCTATGCGCAGGAATCACG ACTTTACTTCACATCCTTGTGTGTTGGGTTCTGGTTTTCAAATCTGGCCTTGGATATATAGGAGCTGCATTGGCTAGTTCATTCTCTTATTGGATCAATG TATTACTTTTGGTACTTTATGTCAAGTTCTCTTCTTCATGTTCAAAAACTTGGACAGGCTTTTCAAAGGAGGCCTTCCACGATATTGTTAATTTTATGAG GCTTGCAATTCCTTCAGCTGTTATGGTTTGCTTGGAAATGTGGTCTTTTGAATCGATGGTTCTTATGTCTGGTCTGCTCCCTAATCCAGAATTGGAGACT TCAGTTCTTTCTATTAGCCTTAATACAGCTGCAACTGTTTGGATGATCCCTTACGGACTAAGTGGTGCTGCCAGCACCCGAGTCTCAAATGAGTTAGGAG CACAGCATCCATACCGCGCGCGATTAGCAGTTTGCGTTGTCATCACAATTGCTGTTGCTGAAGGCATTTTGGTGGGAATAGTCTTGATATTGATTCGCAA TGTTTGGGGCTACGCCTATAGCAATGACATAGAAGTTGTTGACTATGTAGCAGTCATGTTGCCTGTTGTAGCGACATCCAACTTCTTAGATGGACTCCAA TGTGTTCTTTCAGGCGTTGCCAGAGGATGTGGTTGGCAGAAGATTGGTGCATACATCAATCTTGGATCATATTATTTGGTGGGAATCCCCATTGCAATTT TATTAGCTTTTGTCTTTCATGTTGGAGGAAAGGGCCTTTGGCTGGGGATAATATGTGCACTCATCGTGCAAGTTTTTTCTCTTGCCACTATTACTATTCG TACAAATTGGGAGCAAGAAGCAAAGAAGGCTACTGAAAGAGTATATGATGAAGTAATTCCAGTGGATACAGTATCATGA
AA sequence Show only first row Show all	>Potri.012G051900.2 pacid=42783192 polypeptide=Potri.012G051900.2.p locus=Potri.012G051900 ID=Potri.012G051900.2.v4.1 annot-version=v4.1 MEREQQSLSLNTPLCEGNGVGLYEERNQERGISKKEILEEVKRQLWLAGPLISVSLLQYCIQMISVMFVGHLGELSLSGASMATSFASVTGFSLLLGMAS ALDTFCGQAYGARQFHMLSIHMQRAMVVLLLVSIPLAIIWANTRPILIACGQQKDIAEEAGLYARFMIPSLFAYGLLQCLVKFLQTQNIVFPMMLCAGIT TLLHILVCWVLVFKSGLGYIGAALASSFSYWINVLLLVLYVKFSSSCSKTWTGFSKEAFHDIVNFMRLAIPSAVMVCLEMWSFESMVLMSGLLPNPELET SVLSISLNTAATVWMIPYGLSGAASTRVSNELGAQHPYRARLAVCVVITIAVAEGILVGIVLILIRNVWGYAYSNDIEVVDYVAVMLPVVATSNFLDGLQ CVLSGVARGCGWQKIGAYINLGSYYLVGIPIAILLAFVFHVGGKGLWLGIICALIVQVFSLATITIRTNWEQEAKKATERVYDEVIPVDTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52450			MATE efflux family protein (.1...		Potri.012G051900 [exp]	0	1
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.003G088700 [exp]	1.41	0.9445
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	8.66	0.9364
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	8.94	0.9351
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	8.94	0.9361
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Potri.010G062300 [exp]	9.94	0.9253
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	13.74	0.9296
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	16.00	0.8976
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	17.02	0.9287
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	18.33	0.9239
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	19.28	0.9342	Pt-CLPC.2

Compare expression of checked genes

Potri.012G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.