Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18060 296 / 1e-101 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017999 [exp] 298 / 5e-102 AT1G18060 271 / 3e-92 unknown protein Lus10041995 [exp] 295 / 8e-101 AT1G18060 271 / 4e-92 unknown protein Lus10012667 [exp] 197 / 2e-62 AT1G18060 204 / 7e-66 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G052300.1 pacid=42784049 polypeptide=Potri.012G052300.1.p locus=Potri.012G052300 ID=Potri.012G052300.1.v4.1 annot-version=v4.1 ATGGGCTCACAAGCAACAGCAGCAGCCTCCTATTTATCTTGCATCAACTGGGTGGTTCTGAATTCGTCTCAGATATCATCCTTGAACCCTTCGTTTCTCC CTCTCAAAGCCGAAACCTGTCACTTTCCTCTTCATTCTGATATAAAGCAGGACGCCTCTTCTCTCAAATACCCAAACCTTCATCTCCTTAAACTCCGAAA TGTTAGAACTAGAGCTACCCTTGATGAAAGTGCTCCTGCCCCTATTCGTGTCCAGGAAGAAGAAGATGAAGGACCGCAGCCCCAACCCAGCGAAGAAGTT AAGGAGAGTGTGAAAGTGCTCAAGAATGCTGCAAAGACAAGAAAGGTTGCAGCAGAGGTGGTTTTGTCAGCTCTAACAGTGATTGAGAAGGCCAAACTTG ACCCCTCAGGGTTTCTTAATACACTTGGTGGGTCGAAATCCCCTGGCAGAACTTGGATGCTTATTTTCACGGCTGAGAAGAAATTGGATCGTGGACGGTA CTTCCCCCTTACTGCTATTCAGAGGTTCGATGCTGCTGGCAAGAGGATTGAAAATGGAGTATATCTTGGACCAATTGGATTCTTGACGTTTGAAGGCAGA TTATCATGGAAGAACAGAATACTGGCCTTCATTTTTGAGCGCATGCGCATAAAAATTGGACCTTTGAATCCTTTTGAGATCAGTCTTGGCCAAAAGGAAG ACAGAGAACCAAGCACGAAGGACCCTTTCTTCATCTGGTTTTATATTGATGAGGAACTAGCAGTTGCTCGAGGCAGAAGTGGGGGAACTGCATTTTGGTG CCGATGTCGCCGTGTTGCCACTTGA
AA sequence Show only first row Show all	>Potri.012G052300.1 pacid=42784049 polypeptide=Potri.012G052300.1.p locus=Potri.012G052300 ID=Potri.012G052300.1.v4.1 annot-version=v4.1 MGSQATAAASYLSCINWVVLNSSQISSLNPSFLPLKAETCHFPLHSDIKQDASSLKYPNLHLLKLRNVRTRATLDESAPAPIRVQEEEDEGPQPQPSEEV KESVKVLKNAAKTRKVAAEVVLSALTVIEKAKLDPSGFLNTLGGSKSPGRTWMLIFTAEKKLDRGRYFPLTAIQRFDAAGKRIENGVYLGPIGFLTFEGR LSWKNRILAFIFERMRIKIGPLNPFEISLGQKEDREPSTKDPFFIWFYIDEELAVARGRSGGTAFWCRCRRVAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18060			unknown protein		Potri.012G052300 [exp]	0	1
AT3G44620			protein tyrosine phosphatases;...		Potri.009G146800 [exp]	1.41	0.9857
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.014G106400 [exp]	3.00	0.9830	TMP14.2
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	4.47	0.9822
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	5.47	0.9794
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	7.00	0.9784	Pt-PETC.2
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	7.34	0.9748
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	9.79	0.9793	RBP29.1
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	12.00	0.9778
AT1G54520			unknown protein		Potri.005G049500 [exp]	12.24	0.9745
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	12.48	0.9737

Compare expression of checked genes

Potri.012G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.