Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GBF1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18080 575 / 0 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 572 / 0 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 572 / 0 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G49660 126 / 7e-34 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 100 / 5e-24 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 100 / 6e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 95 / 2e-21 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 94 / 8e-21 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 92 / 2e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 92 / 3e-20 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041600 [exp] 627 / 0 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 115 / 9e-30 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 108 / 4e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 108 / 7e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 97 / 5e-22 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 97 / 5e-22 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 95 / 2e-21 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 93 / 3e-21 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 92 / 3e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017570 [exp] 585 / 0 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 570 / 0 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 524 / 0 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 114 / 3e-29 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 113 / 6e-29 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 109 / 2e-27 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 105 / 5e-26 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 99 / 1e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 96 / 2e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 94 / 9e-21 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G052700.1 pacid=42782542 polypeptide=Potri.012G052700.1.p locus=Potri.012G052700 ID=Potri.012G052700.1.v4.1 annot-version=v4.1 ATGGCCACCGAGACCCTTATTCTTCGAGGCACCATGAGAGCCCACACTGACCAGGTCACAGCAATAGCCACACCAATTGACAACACTGACATGATTGTCA GTGCATCCCGCGACAAGTCCATCATTCTTTGGCACTTAACCAAAGATGAAAAAACCTATGGTGTCGCTCGCCGTCGTTTGACTGGTCACTCCCACTTCGT ACAAGACGTTGTTCTCTCCTCCGATGGTCAGTTCGCTTTGTCCGGTTCCTGGGACGGCGAGCTCCGCCTCTGGGACTTGGCTACTGGTGTCTCTGCTCGC CGATTCGTCGGCCACACCAAGGATGTGTTGTCTGTTGCCTTCTCTTTTGATAACCGACAGATCGTTTCTGCTTCAAGGGATAAGACAATCAAGCTGTGGA ATACTCTTGGTGAATGCAAGTATACCATTCAAGAGGCTGAATCTCATACCGACTGGGTTTCGTGTGTGCGTTTTAGCCCAAGTACGTTGCAGCCCACGAT TGTTTCTGCTTCATGGGACAAGACAGTGAAGGTTTGGAATTTGACTAACTGCAAGCTGAGGTCTACACTTGCAGGGCATAGTGGATATGTGAACACGGTG GCTGTTTCGCCAGATGGGTCATTGTGTGCAAGTGGAGGGAAAGATGGGGTGATTTTGTTGTGGGATTTGGCTGAAGGAAAGAAGCTTTATAGTTTGGATG CAGGTGCAGTGATTAATGCGTTGTGCTTTAGCCCTAATAGGTACTGGTTATGTGCTGCCACAGAGAATAGCATTAAGATTTGGGATCTGGAGAGCAAGAT GGTTGTTGATGATTTGAAGGTTGATCTAAAAGCCGAAGCTGAGAAATCCGAGGGTACTACCGCAACTGCTGTCAGTACCAAGAAGAAGATCTACTGCACA AGCTTGAACTGGAGTGCTGATGGAAGCACCTTGTTCAGTGGCTATACCGATGGTGTTATCCGAGTCTGGGGAGTTGGTCGCTATTAG
AA sequence Show only first row Show all	>Potri.012G052700.1 pacid=42782542 polypeptide=Potri.012G052700.1.p locus=Potri.012G052700 ID=Potri.012G052700.1.v4.1 annot-version=v4.1 MATETLILRGTMRAHTDQVTAIATPIDNTDMIVSASRDKSIILWHLTKDEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVSAR RFVGHTKDVLSVAFSFDNRQIVSASRDKTIKLWNTLGECKYTIQEAESHTDWVSCVRFSPSTLQPTIVSASWDKTVKVWNLTNCKLRSTLAGHSGYVNTV AVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAVINALCFSPNRYWLCAATENSIKIWDLESKMVVDDLKVDLKAEAEKSEGTTATAVSTKKKIYCT SLNWSADGSTLFSGYTDGVIRVWGVGRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.012G052700 [exp]	0	1	Pt-GBF1.3
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.008G050200 [exp]	4.58	0.9635
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.008G150000 [exp]	4.89	0.9653
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	7.21	0.9624
AT1G15250			Zinc-binding ribosomal protein...		Potri.006G243300 [exp]	8.12	0.9426
AT2G37190			Ribosomal protein L11 family p...		Potri.018G145506 [exp]	8.24	0.9472
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.016G069000 [exp]	9.48	0.9529
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.008G187000 [exp]	10.24	0.9571
AT4G15000			Ribosomal L27e protein family ...		Potri.001G342500 [exp]	10.95	0.9404	RPL27.3
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	11.18	0.9589	RPL15.3
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.001G304700 [exp]	11.22	0.9584	RPS16.3

Compare expression of checked genes

Potri.012G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.