Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18230 298 / 1e-91 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 252 / 5e-74 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 117 / 1e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 114 / 1e-26 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 112 / 8e-26 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G16270 104 / 7e-23 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 103 / 1e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 103 / 2e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 97 / 3e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 97 / 4e-22 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119500 [exp] 269 / 2e-80 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 260 / 4e-77 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 134 / 1e-33 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 127 / 2e-31 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 121 / 5e-29 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G095600 [exp] 117 / 9e-28 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 114 / 7e-27 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 114 / 1e-26 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G114300 [exp] 103 / 1e-22 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007952 [exp] 216 / 6e-61 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 194 / 2e-56 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 191 / 4e-54 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 189 / 2e-51 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 141 / 6e-36 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 133 / 3e-33 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 125 / 2e-32 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 129 / 6e-32 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 120 / 1e-28 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 120 / 2e-28 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.012G053500.1 pacid=42783165 polypeptide=Potri.012G053500.1.p locus=Potri.012G053500 ID=Potri.012G053500.1.v4.1 annot-version=v4.1 ATGGATCCACCACCTCTGCCACCTCTCCACAATGCTACCACCTCTGCCAATCCCACCACTGTCCATCTGAACTACCCTGACTCTGTTGAGTCCTCGCCCC GCTCCCATCCACCAGACAGTACATTCAATGAGACTCTCCCGCCTGTCCCAGGTGCTAAGCTCCGCCTAATGTGCAGCTATGGAGGCCACATAATCCCCCG TCCACATGACAAAACCCTCTGCTATGTAGGCGGTGAGACACGTATGGTAGCCATTGACCGGCATTCCTCTCTCCCCATCCTCTCCTCCCGCCTTTCTCGA ACTCTCCTCAATGGTCGTCCCTTCACTCTCAAGTACCAGCTGCCTCATGAAGACCTTGACTCTCTAGTATCTGTAACCACAGATGAAGATCTTGACAACA TGATAGAAGAATATGACCGCATAAATGCATCATCATCAGCTTTATCTCCTTCCCGTATCCGCTTGTTCATTTTCTTTAGCAAGCCTGAGACTGCAGCCTC CATGGGATCACTTCTTGATGATGCAAAGTCAGAAACATGGTTTGTTGATGCGCTTAATGGTTCAGGATTAATTCCACGAAACCTATCAGATTCTGCTACA TTGGAATGCTTAGTGACTCTTGACAATGATCAGGACTTGGAGGCTCAGGCAGAAGGTGTTGAAGGGGAGAACAAGAAAGCTAAGAATGAACTATTGCACG AAGTGCACACCACACTATCTGACTCACCTGTTGTGGAGAAGAATTCATCATTTGGTTCATCTTCTTCTTCCCCTTCAATGACCAACCTGCCACCTATCCG GGTTCGTGTGGAGGATCCAAGAGTTGGAGTTGAGGAGCAGTTTGCACAGATGACTTATGCTCAAGTTGTGCAGAAGCATGATGATGGCTATGGCCTTTTA TCTGCTCCGCCACCTCCAATTCCTGTATCAATATCTGCAGTTGGAACTGCAATATCCACTAATCCTGCTGGTGGGTCTAGTGAGCACTTGAATCGGCTTT TATCAGATGATGAGAGGTCGGATCAGGGTGTTCCGGTAAGTTTTCGCAAACCACCACTTCCTGTACTGCAGCCCGTGCCACACAAGACCGGTACCTGTTA CAACTTGCCTTCACCAGATTCAGTTGCAAGTGATAGTAGTATTGCGTCTGCAAGCTCTCTTTCAAAGCCCATGTATTATCAAGATCAAGCTCATGCAGCA CCCAGAGACAACAGAGGTCCTTCTAGCCCTGATACAAAAGGTGATATTCCAATCCCAAGCTCTCAAATCCAAATGCAACAAGTCCAAGGTTCTGGATACA CGTTGCCTGATCAGCAGCAGCAGCAGCAACAATTTGTAGGAGGCAGCACACATTTCACCACAACTCCAATGCCAATGACATCTTACTACCCAATTTACGC TCCTCCGTCACAACAGCCTCATCTTCCAATGGATCACCAATATCCTGTATACTTAATGCAGGTTACTCAACCACAACCATACATGTCTATGCAAACTAAC ATGGTTGACACTGCTACTGTTGCAACCACGAGCCGCCCTGCAACACCTTCCACTGCAACTTACAGGGACCCACATCCACCCATTTACCCTGCAAAGACAG TATCTACCTCAGCTAAGCCTGAAATGGCTGCAACTGTGTACAGAACAGTGATGCCATCAACTCCTCCATTAGTCCATGTCCCGGCCAATCAGTTCCAGCA ATCATACATGGGTTATTCTCAAATGCAACATCCAACTCAATCCATTAATGCTGCTGCTACTAATTATGCTTATTCTGAATATGCAAATTCTACACATGAC CAATTCTACTACACCCCTAGTACTCAAGGTTCTCCTCAGTACCAATCCATGAACCCAGCTACAGTCGTAGCATTAGCAGATGATTCAACACGGATACCAA CAAACAACACAATGCAGCAGAACATCGGAACCTCGCAGCCACAATAA
AA sequence Show only first row Show all	>Potri.012G053500.1 pacid=42783165 polypeptide=Potri.012G053500.1.p locus=Potri.012G053500 ID=Potri.012G053500.1.v4.1 annot-version=v4.1 MDPPPLPPLHNATTSANPTTVHLNYPDSVESSPRSHPPDSTFNETLPPVPGAKLRLMCSYGGHIIPRPHDKTLCYVGGETRMVAIDRHSSLPILSSRLSR TLLNGRPFTLKYQLPHEDLDSLVSVTTDEDLDNMIEEYDRINASSSALSPSRIRLFIFFSKPETAASMGSLLDDAKSETWFVDALNGSGLIPRNLSDSAT LECLVTLDNDQDLEAQAEGVEGENKKAKNELLHEVHTTLSDSPVVEKNSSFGSSSSSPSMTNLPPIRVRVEDPRVGVEEQFAQMTYAQVVQKHDDGYGLL SAPPPPIPVSISAVGTAISTNPAGGSSEHLNRLLSDDERSDQGVPVSFRKPPLPVLQPVPHKTGTCYNLPSPDSVASDSSIASASSLSKPMYYQDQAHAA PRDNRGPSSPDTKGDIPIPSSQIQMQQVQGSGYTLPDQQQQQQQFVGGSTHFTTTPMPMTSYYPIYAPPSQQPHLPMDHQYPVYLMQVTQPQPYMSMQTN MVDTATVATTSRPATPSTATYRDPHPPIYPAKTVSTSAKPEMAATVYRTVMPSTPPLVHVPANQFQQSYMGYSQMQHPTQSINAAATNYAYSEYANSTHD QFYYTPSTQGSPQYQSMNPATVVALADDSTRIPTNNTMQQNIGTSQPQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18230			Octicosapeptide/Phox/Bem1p fam...		Potri.012G053500 [exp]	0	1
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	2.23	0.9592	CYP712.2
AT1G19900			glyoxal oxidase-related protei...		Potri.005G235500 [exp]	3.87	0.9326
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	5.09	0.9521
AT1G06330			Heavy metal transport/detoxifi...		Potri.019G107500 [exp]	6.92	0.9387
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	8.66	0.9490
AT3G42180			Exostosin family protein (.1.3...		Potri.018G124832 [exp]	9.16	0.9449
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	10.48	0.9461
AT5G54370			Late embryogenesis abundant (L...		Potri.012G145400 [exp]	10.81	0.9369
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	11.95	0.9348
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.006G058100 [exp]	12.72	0.9304	Pt-CYP712.3

Compare expression of checked genes

Potri.012G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.