Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 507 / 4e-176 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 458 / 2e-158 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119700 [exp] 429 / 3e-145 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 424 / 3e-143 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034107 [exp] 502 / 2e-173 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10013496 [exp] 424 / 9e-144 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10043481 [exp] 404 / 7e-135 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 212 / 4e-63 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 163 / 2e-46 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10023171 [exp] 44 / 0.0003 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.012G053700.1 pacid=42783834 polypeptide=Potri.012G053700.1.p locus=Potri.012G053700 ID=Potri.012G053700.1.v4.1 annot-version=v4.1 ATGGCAATGGCTGTTTTCCAACTGGATATCCGACCCGCCACCAGAATTGCCGGTGTCGCAGCCCTCTATCACCTCAAGAACTCTGCTCCATCCGACCCGA GACCTAACATCTTACGGATCGGTTCATCAGCTAGGAATATAACAAGACCAGGAAAAGGGTTGGCTGTGACGAAAAATGCAGAGAAGAACAACAAGAAGCC TGATGCATGTACGGCAGATGAGCTCCACTATGTCACCGTTTCTGATTCTGAATGGAAACTCGCTCTATGGCGTTACTTACCCTCTCCAAAGGCAAAGCCA AGGAACCATCCGCTGCTGCTGTTATCTGGGGTTGGAACTAATGCTATTGGATATGATCTCTCTCCTGAGTCATCATTTGCTCGCTCCATGTCTAATCAAG GATTTGATACATGGACTCTTGAAGTTAGAGGAACTGGTTTGAGTGCATTGGTGGGTGACCATGGGGAAGATTCTGAGGTTTCTTCGGTTGAAGGGGAAAT AACAGAAATTGTATCTAAATCCAAGAAATCACAATCAAAGTTGTCGGAAACTCTTGTGCGCTTATCTGAAAGGTTCTTGGGATACTTTGATGAAGGGAGA AACTCTGTCATTGCATGCCAAATTAGGGATTTAAGTCAAAAGCTTGTGAATATTATTGAAGGCCAGCGATCAGTTGCACCACAGATTTTCGGCTTCTCAG AGAACTTTTCAACTGCACTAGAAAAATTCCTGAAACAACTTGATCTCATTGAGAAGTATGATTGGGACTTTGATCACTACCTGAAAGATGATTTGCCAGC TGTGATTGGGTACATAAGGACTGAATGCAGACCAAAGGATGGCAAGTTGCATGCAATCGGGCACTCCATGGGCGGTATTCTGCTATATGCACTGCTGTCA CGATGTTGTTTTCAAGGAATGGATTCGGGGTTGGCATCAGTCGTTACTTTGGGATCATCACTTGACTACACGTCTTCAAAATCATCACTCAAATTGCTTT TACCTGTGGCAGACCCTGCAAAGGCAGTTAATGTTCCTGTTATTCCACTTGGAGTATTACTTTCTGCTGTTCACACTTTCGCATCTCGTCCTCCTTATGT ATTGTCTTGGTTAAATCATCAAATTTCTGCTCCTGGCATGATGCATCCTGAGTTGCTTGAAAAACTTGTTTTGAACAACTTCTGCACAGTACCAGCAAAG CTTCTATTGCAGCTGACAACAGCATTTGAAGAAGGTGGATTACGAGACCGTAGTGGATCTTTCCTATACAAGGATCATCTAGGCGAAACTAATGTCCCTG TGTTAGCAATTGCAGGGGATCAAGATCTCATCTGTCCTCCAGAAGCTGTATATGAAACAGTGAAGGTCATTCCAAAGCATTTGGTTACTTACAGAGTTTT TGGAGAGCCAAGTGGTCCGCATTATGCTCACTATGATCTAGTGGGAGGAGGCCGTCTGGCTGTAAGTCAAGTGTATCCTTGCATAATCAATTTCCTCATT CAACATGACATATAA
AA sequence Show only first row Show all	>Potri.012G053700.1 pacid=42783834 polypeptide=Potri.012G053700.1.p locus=Potri.012G053700 ID=Potri.012G053700.1.v4.1 annot-version=v4.1 MAMAVFQLDIRPATRIAGVAALYHLKNSAPSDPRPNILRIGSSARNITRPGKGLAVTKNAEKNNKKPDACTADELHYVTVSDSEWKLALWRYLPSPKAKP RNHPLLLLSGVGTNAIGYDLSPESSFARSMSNQGFDTWTLEVRGTGLSALVGDHGEDSEVSSVEGEITEIVSKSKKSQSKLSETLVRLSERFLGYFDEGR NSVIACQIRDLSQKLVNIIEGQRSVAPQIFGFSENFSTALEKFLKQLDLIEKYDWDFDHYLKDDLPAVIGYIRTECRPKDGKLHAIGHSMGGILLYALLS RCCFQGMDSGLASVVTLGSSLDYTSSKSSLKLLLPVADPAKAVNVPVIPLGVLLSAVHTFASRPPYVLSWLNHQISAPGMMHPELLEKLVLNNFCTVPAK LLLQLTTAFEEGGLRDRSGSFLYKDHLGETNVPVLAIAGDQDLICPPEAVYETVKVIPKHLVTYRVFGEPSGPHYAHYDLVGGGRLAVSQVYPCIINFLI QHDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	0	1
AT1G52720			unknown protein		Potri.001G174300 [exp]	2.00	0.6854
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	3.00	0.6702
AT4G05070			Wound-responsive family protei...		Potri.011G041700 [exp]	3.46	0.6900
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	9.48	0.6132
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	12.48	0.6223
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	23.21	0.6224
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.011G066600 [exp]	26.83	0.6270
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	27.87	0.6072
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	30.72	0.6689
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	38.02	0.6455

Compare expression of checked genes

Potri.012G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.