Plant FIBer expression Database

Potri.012G054200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18270 536 / 0 CYP77A5P "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G044400
[exp]
397 / 4e-138 AT3G18270 312 / 9e-105 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007062
[exp]
560 / 0 AT3G18270 499 / 5e-177 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Lus10020434
[exp]
547 / 0 AT3G18270 483 / 6e-171 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Lus10030915
[exp]
51 / 1e-06 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0227 Enolase_N PF02746 MR_MLE_N Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CL0256 Enolase_TIM PF13378 MR_MLE_C Enolase C-terminal domain-like
Representative CDS sequence
>Potri.012G054200.8 pacid=42782537 polypeptide=Potri.012G054200.8.p locus=Potri.012G054200 ID=Potri.012G054200.8.v4.1 annot-version=v4.1
ATGCTTTCAATTGGGTCTCTCTGTCTCTCTCTCGGAACTACTCCAAAACCTCTAAAACCCTCTAAAACCCCTAAACCCATTCGCAAGATTTATGCAACTA
AAGCAATGGCTGGATCAAACCCCAAACAAGTTTCAACCTTTGAGTTTAGGGATTTGATGGAGACTTTTGCGGTGGATGTTAAGAGGGCAGAAAATAGGCC
ATTGAATGTGCCATTGATTGCACCTTTTACAATAGCTTCATCAAGGCTTGACAAAGTGGAGAACGTGGCAATTAGGATTGAATTGAGTGATGGTTGTGTG
GGGTGGGGTGAGGCACCGATATTGCCATTTGTTACTGCAGAGGATCAGTCCACTGCTATGATTAAGGCTAGAGAGGCTTGTGAGTTGCTGAAGAACAGTT
CATCGATGAAGTTGGGCTTGGTTTTGGAGAGAGTTTCTGAGATTCTTCCCGGACATGAGTTTGCTTCTGTTAGAGCAGGAGTCGAGATGGCATTGATTGA
TGCAGTGGCTAAAAGCATCAATGTACCTTTATGGATATTATTTGGTGGAGCTTCTGATAGCATAACAACTGATATAACAATTCCAATTGTATCTTCTGCA
GAAGCTGCTGAATTGGCTTCAAAGTATCGGAAACAAGGATTCCAAACTTTAAAGTTGAAGGTGGGAAAGAACCTTAAGGAGGACATAGAAGTTCTTCAAG
CTATACGTGCGGTCCATCCTGATTGCTTATTTATCTTGGATGCTAATGAGGGTTATAAACCAGAGGAAGCTATTGAAGTTCTTGAAGAATTGCACAAAAT
GGGGGTAACTCCCATTCTTTTTGAACAACCAGTTCATAGAGATGATTGGGAAGGTCTTGGTCATGTTACTCATATCGCAAAAGGCAAATATGGGGTATCT
GTTGCAGCAGATGAGAGTTGTCGTAGCTTAGTTGATGCAAAGAGAATAATAAAAGGAAATCTTGCAGATGTCATTAACATTAAGCTTGCTAAAGTTGGTG
TTGTTGGGGGACTTGAAATTATTGAGGAGGCAAGGACATCAGGATTGGATCTGATGATTGGTGGAATGGTTGAGACCAGACTAGCCATGGGCTTTGCTGG
TCATCTTGCTGCTGGCTTTGGCTGTTTCAAGTTCATTGATTTGGACACACCCCTTTTACTGTCAGAAGATCCTGTCCTTGAGGGTTATGAAGTATCGGGT
GCTGTTTACAAATTCACAGATGCTCAAGGGCATGCTGGTTTCCTTGACTGGGACAATGTTTTGTGGTAA
AA sequence
>Potri.012G054200.8 pacid=42782537 polypeptide=Potri.012G054200.8.p locus=Potri.012G054200 ID=Potri.012G054200.8.v4.1 annot-version=v4.1
MLSIGSLCLSLGTTPKPLKPSKTPKPIRKIYATKAMAGSNPKQVSTFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSDGCV
GWGEAPILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHEFASVRAGVEMALIDAVAKSINVPLWILFGGASDSITTDITIPIVSSA
EAAELASKYRKQGFQTLKLKVGKNLKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVTPILFEQPVHRDDWEGLGHVTHIAKGKYGVS
VAADESCRSLVDAKRIIKGNLADVINIKLAKVGVVGGLEIIEEARTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSEDPVLEGYEVSG
AVYKFTDAQGHAGFLDWDNVLW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18270 CYP77A5P "cytochrome P450, family 77, s... Potri.012G054200
[exp]
0 1
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.004G212700
[exp]
7.28 0.7097
AT5G61980 AGD1 ARF-GAP domain 1 (.1) Potri.015G105500
[exp]
9.16 0.6700
AT1G76630 Tetratricopeptide repeat (TPR)... Potri.002G001700
[exp]
9.21 0.6756
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Potri.011G045600
[exp]
12.16 0.6834
AT5G01660 unknown protein Potri.016G127600
[exp]
12.72 0.6713
AT3G44730 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTE... Potri.011G165200
[exp]
13.07 0.6848
AT5G13690 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCL... Potri.012G075932
[exp]
17.20 0.6669
AT5G63700 zinc ion binding;DNA binding (... Potri.001G305900
[exp]
17.66 0.6437
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Potri.003G107700
[exp]
18.38 0.7014
AT2G02170 Remorin family protein (.1.2) Potri.008G144300
[exp]
30.39 0.6324

Potri.012G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.