Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18370 1466 / 0 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 1024 / 0 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G66310 467 / 3e-148 ATP binding microtubule motor family protein (.1) AT4G38950 446 / 1e-142 ATP binding microtubule motor family protein (.1.2) AT2G21300 446 / 2e-142 ATP binding microtubule motor family protein (.1.2) AT3G51150 448 / 3e-141 ATP binding microtubule motor family protein (.1.2) AT4G24170 443 / 9e-140 ATP binding microtubule motor family protein (.1) AT5G42490 313 / 5e-91 ATP binding microtubule motor family protein (.1) AT3G10180 289 / 9e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 281 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044600 [exp] 1741 / 0 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G136600 [exp] 1123 / 0 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.007G014800 [exp] 461 / 2e-146 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 452 / 5e-144 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 451 / 6e-143 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 446 / 1e-140 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 443 / 8e-140 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G040700 [exp] 293 / 5e-83 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 284 / 8e-81 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032452 [exp] 1474 / 0 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 1216 / 0 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 1025 / 0 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10015448 [exp] 439 / 2e-144 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10031086 [exp] 448 / 1e-142 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 452 / 4e-142 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10035471 [exp] 444 / 4e-141 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 448 / 1e-140 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 444 / 2e-140 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 441 / 2e-139 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0023 [poplar] [flax] PF11995 [poplar] [flax] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Potri.012G054400.5 pacid=42784343 polypeptide=Potri.012G054400.5.p locus=Potri.012G054400 ID=Potri.012G054400.5.v4.1 annot-version=v4.1 ATGACACTTAGAACCCCTGGAACACCAGCTTCTAAGATTGACAGGACACCAGCAACAACCCCAGGAGGGCCTAAAGCAAAAGAGGAGAAGATTGTAGTTA CTGTCAGATTAAGGCCTTTAAACAAGAAGGAGCAGTTAGCTAAGGACCAAATTGCTTGGGACTGTGTTGATGATCATACTATTGTCTTTAAGCCACCCCC TCAAGAACGAGCAGCTCAACCGGCCTCTTTCATTTTTGATAAAGTTTTTGGTCCTTCTAGTATAACTGAAGCTGTTTATGAAGATGGAGTGAAAAATGTT GCTTTGTCTGCTTTGATGGGCATAAATGCAACCATATTTGCATATGGGCAAACTAGCAGTGGGAAGACATACACGATGAGAGGGATAACTGATAAAGCTG TTAATGACATCTATAAGCATATAATGAATACACCAGAGAGAGATTTTACAATTAGGATTTCTGGACTAGAAATCTATAATGAAAATGTCAGGGACCTGTT AAATTCTGAATCTGGTCGCAATCTAAAGCTTCTAGATGACCCGGAGAAAGGTACTGTGGTTGAGAAGTTGGTAGAAGAGACAGCAAGTAATGATCAGCAT TTAAGGCATCTAATCAGTATATGTGAAGCGCAAAGGCAAGTTGGTGAAACTGCCCTTAATGATACTAGCTCACGATCACACCAAATTATAAGGCTGACAA TAGAAAGCACACTTCGAGAAAATTCAGATTGTGTGAGATCTTTCGTTGCAAGCCTGAATTTTGTTGATCTAGCTGGAAGTGAAAGAGCTTCACAGACACA TGCAGATGGTGCCAGACTCAGGGAAGGTTGCCATATTAATCTTAGTCTGATGACCCTGACAACTGTGATTAGAAAGCTCAGTGTTGGGAAACGTAGTGGT CATATACCTTACAGAGACTCGAAGCTTACTCGCATATTGCAGCACTCACTTGGTGGGAATGCTTGTACTGCCATCATATGCACTTTAAGCCCAGCTCTGA CCCATGTTGAACAATCTCGAAATACCCTTTACTTTGCCACACGAGCAAAGGAAGTAACTAATAATGCCCATGTCAACATGGTTGTTTCGGATAAGCAGCT TGTGAAACATCTGCAGAAGGAGGTAGCCAGGCTGGAAGCAGAGCTGCGCACTCCTGACCCTTCAAGGGAAAAAGACTTCAAAATTCGGCAGATGGAGATG GAAATGGAGGAGCTGAGACGCCAAAGAGATCTTGCGCAATCTGAGGTGGATGAATTGCGCAGAAAACTTCAAGAGGATCGACAGGTTTCAAGCACACTGG AATCACCCCGTCCATTAGTGAAGAAATGTCTCTCTTATTCTGATGCATCCTTGCCAAATCTTGACATCAAGGAGTCAAGCCACTGTGATAGAACCAGGAA AACGTTGCTAAGGCAGTCTATGAGGCAATCATCAACTGCACCTTTCACGCTAATGCATGAAATTCGCAAACTTGAACACCTTCAGGAGCAACTTGGGGAG GAAGCAAATCGAGCTCTGGAAGTTCTACAGAAGGAGGTGGCTTGTCATAGATTAGGCAACCAAGATGCAGCTGAGACAATTGCTAAACTGCAAGCAGAAA TCAGGGACATGCGCACTATCCAACCGGTTCCAAAAGAAGTTGAAATTGGAAGTGTTGTAGCTCCTAACAAGAGTGTCAATGCTAATCTCAAAGATGAAAT AACAAGGCTTCATTCACAGGGAAGCACTTTTGCAGATCTCGAAGAGCAACTTGAAAATGTTCAAAAGTCCATTGACAAATTAGTAATGTCTCTTCCAAAC AATAATCCACAATCAAACTGTGAAGCAGCTTCAAAAGCTAAGAATCAACAGAAGAAGAAAAGGATACTTCCTTTGGCTTCAAGTAATGGCACCAACAGGC AAAATTTTATAAGGTCTCCTTGCTCCCCGCTGTCTACTTCTCGGCAAGTTTTGGAAAGTGAGATTGAAAATAGAGCTCCGAATAATGATGACATTGTAGT CAGCGAGACCATGTCAGAGTCTGAGAAAGAGACTCCTACAAAGATTGAAGAAGGGGGGGAAATCTCATCAAAGGAAGGGACACCTGGTGGCTATCGGCGC TCAAGTTCAGTGAACATGAAGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAGGAGAATGTTAGAAGCATAAGAACTTACGTGACCGAACTTAAAGAAC GTGTGGCCAAATTGCAATACCAAAAGCAGCTACTTGTTTGCCAGGTCCTTGAGCTGGAAGCAAATGAAGCAGCTGGATATACTATAGAGGAGGAAGAAAA TATAAATGAGCCAGAGCAGCCCCAAGTTTCGTGGCATGTGACTTTTAGGGAGCAAAGGCAGCTGATCATTGAGTTGTGGGATATGTGCTATGTATCCATA ATCCACAGGACACAGTTTTATTTGTTATTCAAGGGCGACCCTGCTGATCAAATATACATGGAAGTGGAGCTAAGACGCTTGACTTGGTTGCAGCAGCATT TGGCAGAACTTGGCAATGCAAGCCCAGCTCATTTTGGAGATGAGCCTACAATATCTCTGTCATCAAGTATTAGAGCACTGAAACGTGAAAAGGAGTTCCT TGCAAAAAGATTGACCTCACGTCTGACTGCAGAAGAGAGAGACGAATTATACATCAAATGGAATGTCCCACTTGATGGGAAGCAGAGGAGGCTACAGTTT GTTAATAAACTGTGGACAGATCCTCATGATGCCAAGCATATACAGGAGAGTGCTGACATAGTGGCAAAACTTGTAGGGTTCTGCGAAGGAGGAAAAATGT CAAAGGAGATGTTTGAACTCAATTTTGCACTGCCAACAGATAAGAGACCATGGATTACGGGCTGGAACCAAATTTCAAACATTCTACATTTGTGA
AA sequence Show only first row Show all	>Potri.012G054400.5 pacid=42784343 polypeptide=Potri.012G054400.5.p locus=Potri.012G054400 ID=Potri.012G054400.5.v4.1 annot-version=v4.1 MTLRTPGTPASKIDRTPATTPGGPKAKEEKIVVTVRLRPLNKKEQLAKDQIAWDCVDDHTIVFKPPPQERAAQPASFIFDKVFGPSSITEAVYEDGVKNV ALSALMGINATIFAYGQTSSGKTYTMRGITDKAVNDIYKHIMNTPERDFTIRISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETASNDQH LRHLISICEAQRQVGETALNDTSSRSHQIIRLTIESTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSG HIPYRDSKLTRILQHSLGGNACTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAHVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDFKIRQMEM EMEELRRQRDLAQSEVDELRRKLQEDRQVSSTLESPRPLVKKCLSYSDASLPNLDIKESSHCDRTRKTLLRQSMRQSSTAPFTLMHEIRKLEHLQEQLGE EANRALEVLQKEVACHRLGNQDAAETIAKLQAEIRDMRTIQPVPKEVEIGSVVAPNKSVNANLKDEITRLHSQGSTFADLEEQLENVQKSIDKLVMSLPN NNPQSNCEAASKAKNQQKKKRILPLASSNGTNRQNFIRSPCSPLSTSRQVLESEIENRAPNNDDIVVSETMSESEKETPTKIEEGGEISSKEGTPGGYRR SSSVNMKKMQKMFQNAAEENVRSIRTYVTELKERVAKLQYQKQLLVCQVLELEANEAAGYTIEEEENINEPEQPQVSWHVTFREQRQLIIELWDMCYVSI IHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHLAELGNASPAHFGDEPTISLSSSIRALKREKEFLAKRLTSRLTAEERDELYIKWNVPLDGKQRRLQF VNKLWTDPHDAKHIQESADIVAKLVGFCEGGKMSKEMFELNFALPTDKRPWITGWNQISNILHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	0	1
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	2.00	0.9747
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	2.23	0.9775
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	2.64	0.9696	Pt-CDC20.3
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	3.87	0.9727
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	4.47	0.9700
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	4.47	0.9705
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	5.47	0.9649
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	5.65	0.9602
AT5G56120			unknown protein		Potri.001G470800 [exp]	6.24	0.9632
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.010G202100 [exp]	6.32	0.9663

Compare expression of checked genes

Potri.012G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.