Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67000 390 / 2e-124 Protein kinase superfamily protein (.1) AT5G38260 380 / 3e-123 Protein kinase superfamily protein (.1) AT1G66910 369 / 2e-118 Protein kinase superfamily protein (.1) AT5G38280 365 / 3e-117 PR5K PR5-like receptor kinase (.1) AT1G66920 359 / 2e-115 Protein kinase superfamily protein (.1.2) AT4G18250 353 / 1e-110 receptor serine/threonine kinase, putative (.1) AT1G70250 350 / 6e-110 receptor serine/threonine kinase, putative (.1) AT1G66980 345 / 3e-105 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 335 / 4e-104 Malectin/receptor-like protein kinase family protein (.1) AT5G39030 335 / 6e-104 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054725 [exp] 603 / 0 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G045200 [exp] 569 / 0 AT5G38260 403 / 1e-132 Protein kinase superfamily protein (.1) Potri.015G044875 [exp] 519 / 3e-178 AT5G38260 360 / 8e-117 Protein kinase superfamily protein (.1) Potri.015G044750 [exp] 468 / 1e-156 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G116900 [exp] 466 / 5e-156 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G117340 [exp] 441 / 2e-146 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.017G117120 [exp] 432 / 9e-143 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.010G121350 [exp] 403 / 1e-132 AT5G38260 364 / 5e-118 Protein kinase superfamily protein (.1) Potri.017G117285 [exp] 403 / 1e-131 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 338 / 1e-107 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 332 / 1e-104 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 331 / 3e-104 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10026761 [exp] 314 / 4e-99 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 313 / 6e-98 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10025545 [exp] 297 / 3e-95 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 306 / 4e-95 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 303 / 2e-93 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008335 [exp] 296 / 5e-90 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10039725 [exp] 260 / 3e-77 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G054550.1 pacid=42783526 polypeptide=Potri.012G054550.1.p locus=Potri.012G054550 ID=Potri.012G054550.1.v4.1 annot-version=v4.1 ATGGCTGCCCATCTTTTGTTCTTACTCTATCGACACCACCCCATCATCACCATCTTCCTTGTCCTAATCCTTGCATCAACATCTTGTGGTGAGGTTGATA ATAAAGATTACAGAGACTGCGAAAAGCATTTTAATTGTGGAGTCTTATCAAACCTTTCTTATCCTTTCTGGGGAGGTGATCGACCTGAAGTTTGTGGACA TAAAGGGTTCGAGCTCAAGTGTGAAGAAGGTCAGCTCCCTATAATACCGAGTGACACACTAGAATTCCGCCTATTTCGTTTAGATCAATCTTCCAGGTTG ATGACTCTGCAGCTAGTGAATTCCCAATATTACATTTGTCCTTCTCAAACTTTAACCAATTCAAGTACTAAGAGTGACATCCATGTCTTCGGCTATGACC TCAACCTTAAAAACCTGAACTTACTTTACAACTGCACGGTCCCGAGCTCGACGCTGGAGCAAAATAGAATTTCGAGGTCGTATTGTAGTGAATATAGTGG CAGATCATTCTATGGAAGTGATGATATCTTGGAGAGCAGTAGTGGGCTAGACCAAACGCAATGTAGCATAAGGTTCAAAATCCCCATTCCAGCTGAGTCT TTTCGTCGACTAACGGGTGACAAACCAGAATTGGAGCAAGTTTTAAGAGAAGAGTTTAACGTGTCGTACAAGTATGATCAAGGTCCTTCAATTTGCGATG GATGCATGGCTTCGAAAGGAATATGTGGAACCAACTTGACTGATCCCAATAGAGAGTTCTTGTGCCTTTGCCGTGACCACCCTTATCCTTTTGTGTGCAA AGGTCATAATCTGAAAGACAGACGACGGATGGCTTCTATTGGAACTAATGGTGTCAAGAAAGTGGGTGGGAAGCTAGGTGATATTCTGAAAGACAAACGA CTTCGGATTGCTGCTATTGGTATTGCCTCTGGATCAGCAGGAATTTTAATCATCCGTATAATTCTTTGTGCCAGAAGGAAGGCCTCGTCAAGTTCTCCAC AGGTTTTTTTAAAGAAGACACATGATCAAGATCTTAAGGATTTGATAAGACATCATGTGCCTCCACCTCTGAAAGAATACAGTTTTTCGGATGTCGAGAA AATGACCAATTTTTTCAATGATAAACTTGGTAAAGGAGGTTATGGAACTGTATACAAAGGAAGGCTAACGGATAGCCATTTGGTGGCAGTGAAGGTCCTG GTAGCTTCAGAAGGGAATGGGGAAGAATACGTCAATGAGGTAGCAAGCATTAGTAGAACTTCCCATGTTAATGTTGTCACTCTGATAGGATTTTGTTTGG AACGTGACAAAAGATTTCTCATCTTCGACTTCATGCCCAACGGATCCTTAGAGAAGTTCATAAATCATGAAAATGCCTTCGAAGCCAGTCAACAACTAGG ATGGGAAAAATTGTACCAAATTGTAATCGGCGTTGCTCGAGGGCTTGAGTATTTGCATCGAGGGTGCAATACAAGGATTGTGCATTTTGACATCAAACCT CATAACATTCTTCTCGACGCAGATTTTTGCCCTAAGATATCTGATTTTGGACTTGCGAAGTCATGCACTGGGAAGGAGAGCAATGTATCGTTATTGGAGG CAAGAGGAACCATTGGATATATAGCGCCAGAAGTGTTCAGTAGAAACTTTGGGCGAGTTTCATACAAGTCCGATGTCTATAGTTATGGAATGATGGTTCT GGAAATGGTTGGAGGCAAAAAGAATCATGAAGCTGAAATCAGTTCTGGTAGCGAAAAATATTTTCCGGAATGGATTTATAAGCATCTTGAGGTAGATGAT GAATCTGGAATTAATGGGGTGCCAACTTCAGAACAAGCTGACAGTGTGAGGAAAATAATAATAGTTGGCTTGTGGTGCATCCAGACAAATCCAGCTGATA GACCATCCATGAGTAAAGTGTTAGAAATGTTAGAAGGACCTATTGGAGCATTGAATATTCCACCAAGGCCTTTCCTGTCTTCTCCTCCAAGGTTAATTCC ATATTCAACAACAACATCATTAACATGA
AA sequence Show only first row Show all	>Potri.012G054550.1 pacid=42783526 polypeptide=Potri.012G054550.1.p locus=Potri.012G054550 ID=Potri.012G054550.1.v4.1 annot-version=v4.1 MAAHLLFLLYRHHPIITIFLVLILASTSCGEVDNKDYRDCEKHFNCGVLSNLSYPFWGGDRPEVCGHKGFELKCEEGQLPIIPSDTLEFRLFRLDQSSRL MTLQLVNSQYYICPSQTLTNSSTKSDIHVFGYDLNLKNLNLLYNCTVPSSTLEQNRISRSYCSEYSGRSFYGSDDILESSSGLDQTQCSIRFKIPIPAES FRRLTGDKPELEQVLREEFNVSYKYDQGPSICDGCMASKGICGTNLTDPNREFLCLCRDHPYPFVCKGHNLKDRRRMASIGTNGVKKVGGKLGDILKDKR LRIAAIGIASGSAGILIIRIILCARRKASSSSPQVFLKKTHDQDLKDLIRHHVPPPLKEYSFSDVEKMTNFFNDKLGKGGYGTVYKGRLTDSHLVAVKVL VASEGNGEEYVNEVASISRTSHVNVVTLIGFCLERDKRFLIFDFMPNGSLEKFINHENAFEASQQLGWEKLYQIVIGVARGLEYLHRGCNTRIVHFDIKP HNILLDADFCPKISDFGLAKSCTGKESNVSLLEARGTIGYIAPEVFSRNFGRVSYKSDVYSYGMMVLEMVGGKKNHEAEISSGSEKYFPEWIYKHLEVDD ESGINGVPTSEQADSVRKIIIVGLWCIQTNPADRPSMSKVLEMLEGPIGALNIPPRPFLSSPPRLIPYSTTTSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67000			Protein kinase superfamily pro...		Potri.012G054550 [exp]	0	1
					Potri.003G152900 [exp]	9.69	0.8971
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.005G007900 [exp]	14.28	0.9334
AT1G18390			Protein kinase superfamily pro...		Potri.012G054725 [exp]	17.32	0.9439
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	25.49	0.9104
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192400 [exp]	33.22	0.9304
AT4G11480		CRK32	cysteine-rich RLK (RECEPTOR-li...		Potri.017G005500 [exp]	50.28	0.9288
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	67.54	0.9194
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003800 [exp]	69.49	0.9216
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.010G074400 [exp]	77.56	0.9070
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014600 [exp]	96.12	0.9130

Compare expression of checked genes

Potri.012G054550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.