Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 516 / 4e-176 Protein kinase superfamily protein (.1.2) AT5G38210 474 / 3e-159 Protein kinase family protein (.1) AT1G25390 449 / 3e-150 Protein kinase superfamily protein (.1) AT1G66880 462 / 4e-148 Protein kinase superfamily protein (.1) AT2G23450 291 / 9e-89 Protein kinase superfamily protein (.1.2) AT1G69910 283 / 4e-86 Protein kinase superfamily protein (.1) AT5G66790 267 / 2e-80 Protein kinase superfamily protein (.1) AT5G58940 233 / 3e-69 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT1G69730 239 / 1e-68 Wall-associated kinase family protein (.1) AT5G02070 236 / 1e-68 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044750 [exp] 1003 / 0 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 697 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 587 / 0 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.012G054550 [exp] 583 / 0 AT1G67000 390 / 2e-124 Protein kinase superfamily protein (.1) Potri.017G118250 [exp] 582 / 0 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 572 / 0 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 557 / 0 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 536 / 0 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.010G120800 [exp] 508 / 9e-172 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029132 [exp] 493 / 6e-167 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 491 / 2e-165 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 489 / 4e-165 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 420 / 4e-136 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 382 / 6e-127 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 298 / 7e-91 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 283 / 2e-86 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10000741 [exp] 269 / 4e-80 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 260 / 3e-77 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 247 / 6e-73 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G054725.1 pacid=42782702 polypeptide=Potri.012G054725.1.p locus=Potri.012G054725 ID=Potri.012G054725.1.v4.1 annot-version=v4.1 ATGGTTGCCCATATTTTGTTCTTACTCTATCAACACCACCCCATCATCACCATCTTCCTTGTCCTAATCCTTGCATCAACATCTTATGGTGAGGATGATA ATAAAGATTACAGAGACTGCAAAAAGCATTTTAATTGTGGAGTCTTATCAAACCTTTCTTATCCTTTCTGGGGAGGTGATCGACCTGAAGTTTGTGGACA TAAAGGGTTCCAGCTCAAGTGTGAAGAAGGCCAGCTCCCTATAATACCAAGTGACAAACTAGAATTCCGCCTATCTCGTTTAAATCAATCTTCCAGGTTG ATGACTCTGCAGCTAGTGAATTCCAAAGATTACATTTGTCCTACTCAAAATTTAGCCAATTCAAGTACTGAGAGTGACATCCATGTCTTCGGTTATGACC TCAACCTTCAAAACCTGAACTTACTTTACAACTGCACGGTCTGGAGCCCGACGCTGGTGCAAAATAGAATTTCGAGTTCGTATTCGAATTGTAGTGAATA TAGTGGCAGATCATTCTATGGAAGTGATGATATCTTGGAGAGCAGTAGTGGGCTAGACCAAACGCAATGTAGCATAAGGTTCAAAATCCCCATTCCAGCT GAGTCTTTTCGTCGACTAACGGGTGACAAACCAGAATTGGAGCAAGTTTTAAGAGAAGAGTTTAAAGTGTCGTACAAGTATGATCAAGGTCCTTCAATTT GCGATGGATGCATGGCTTCGAAAGGAATATGTGGAACCAACTTGACTGATCCCAATAGAGAGTTCTTGTGCCTTTGCCGTGACCACCCTTATCCTTTTGT GTGCAAAGGAAATAAAGATGTCATGAATGTGGGTCGGAAGGTTCGTATGGCTCTTGGGGCATCTCTTGGTACGGTAATCATAATGTCCATAGCCTTCTTC TTCTGGTACCGCCACAAGAAAAGGCAATATGTATCCTTTGTCTCTCGAAGCATTAAATCAGTTCCATCTTCCAAGGCATATATGGAGAAGCGAGGTAGCT ACAATGGCGTCCATCTCTTCTCTTATGATGAACTTGAAGAGGCTACTAACAATTTTGATGAGACTAGAGAGCTTGGAGATGGAGGCTTTGGGACAGTATA TTACGGCAAACTTCCAGATGGCCGCGAGGTTGCAGTCAAGCGCTTGTATGAGAACAATTACAAGAGACTTGAGCAGTTTTTGAATGAAGTTGACATCCTA ACTCGCCTGCGCCATAAAAATCTTGTTCTGCTATATGGATGCACCTCTCGGCATAGCCGTGAACTCCTACTAGTATACGAGTACATTCCCAATGGTACAC TTGCTGATCATCTTCATGGTCAAAGAGCAAAGCCTGGTGCATTGACTTGTCCTACTCGGATGAACATTGCTGTAGAGACCGCAAGTGCATTGGCATATCT TCATGCTTCTGATATTGTGCACCGTGATGTGAAAACCACCAATATTCTCCTTGGTAACGATTTCTGCGTAAAAGTTGCAGATTTTGGGCTGTCTCGACTA TTTCCATTAGACGTCACCCATGTTTCAACTGCTCCACAAGGGACTCCTGGTTATGTTGATCCAGACTATCATCAATGCTACCAGCTGACTGATAAGAGTG ATGTCTATAGCTTCGGGGTGGTCTTGATTGAGCTTATATCATCAATGCCTGCCGTTGATATCTCTAGACACCGGCACGAGATTAATTTGTCTAACATGGC AATCAATAAAATCCAAAGCAATGCATTAAATGAACTTGTTGACCCAAGTCTTGGGTTTGAATCAGATTATGCAGCAAGAAAAATGATTTCTGCGGTGGCT GAGTTGGCTTTTCAATGTCTACAATCTGCAAGGGAGTTGAGACCTTCTATGGAAAAAGTCGTAGAGATTCTGAAAGATATACAAAATAGAGACTACACTG CGGAAAAGGCAGAGGAGATAGATATTCCTTCAGATGATGTTGTGCTGTTGAAGAGTGGCCCGATACCACTTGACTACACGCTGTCACTGTGA
AA sequence Show only first row Show all	>Potri.012G054725.1 pacid=42782702 polypeptide=Potri.012G054725.1.p locus=Potri.012G054725 ID=Potri.012G054725.1.v4.1 annot-version=v4.1 MVAHILFLLYQHHPIITIFLVLILASTSYGEDDNKDYRDCKKHFNCGVLSNLSYPFWGGDRPEVCGHKGFQLKCEEGQLPIIPSDKLEFRLSRLNQSSRL MTLQLVNSKDYICPTQNLANSSTESDIHVFGYDLNLQNLNLLYNCTVWSPTLVQNRISSSYSNCSEYSGRSFYGSDDILESSSGLDQTQCSIRFKIPIPA ESFRRLTGDKPELEQVLREEFKVSYKYDQGPSICDGCMASKGICGTNLTDPNREFLCLCRDHPYPFVCKGNKDVMNVGRKVRMALGASLGTVIIMSIAFF FWYRHKKRQYVSFVSRSIKSVPSSKAYMEKRGSYNGVHLFSYDELEEATNNFDETRELGDGGFGTVYYGKLPDGREVAVKRLYENNYKRLEQFLNEVDIL TRLRHKNLVLLYGCTSRHSRELLLVYEYIPNGTLADHLHGQRAKPGALTCPTRMNIAVETASALAYLHASDIVHRDVKTTNILLGNDFCVKVADFGLSRL FPLDVTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSMPAVDISRHRHEINLSNMAINKIQSNALNELVDPSLGFESDYAARKMISAVA ELAFQCLQSARELRPSMEKVVEILKDIQNRDYTAEKAEEIDIPSDDVVLLKSGPIPLDYTLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18390			Protein kinase superfamily pro...		Potri.012G054725 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003400 [exp]	2.23	0.9772
AT5G36930			Disease resistance protein (TI...		Potri.013G096849 [exp]	13.92	0.9552
AT1G17910			Wall-associated kinase family ...		Potri.003G185732 [exp]	16.24	0.9775
AT1G67000			Protein kinase superfamily pro...		Potri.012G054550 [exp]	17.32	0.9439
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	18.54	0.9752
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G187032 [exp]	21.81	0.9517
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003601 [exp]	24.53	0.9764
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.013G103300 [exp]	26.53	0.9680
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.006G046100 [exp]	30.33	0.9738
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	32.17	0.9709	CBP60.6

Compare expression of checked genes

Potri.012G054725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.