Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48760 815 / 0 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23900 114 / 8e-26 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22770 107 / 1e-23 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 107 / 2e-23 Adaptor protein complex AP-2, alpha subunit (.1) AT1G60070 105 / 9e-23 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G31730 103 / 3e-22 Adaptin family protein (.1) AT1G23940 70 / 5e-12 ARM repeat superfamily protein (.1) AT4G31490 50 / 7e-06 Coatomer, beta subunit (.1) AT4G31480 49 / 1e-05 Coatomer, beta subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045600 [exp] 1608 / 0 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.016G104700 [exp] 127 / 7e-30 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 127 / 1e-29 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 114 / 1e-25 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.004G189700 [exp] 109 / 4e-24 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 105 / 6e-23 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.006G273300 [exp] 47 / 5e-05 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.018G007400 [exp] 44 / 0.0005 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036002 [exp] 1150 / 0 AT1G48760 917 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10016706 [exp] 1129 / 0 AT1G48760 914 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10012988 [exp] 117 / 1e-26 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 112 / 4e-25 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10035684 [exp] 111 / 1e-24 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 111 / 2e-24 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 109 / 4e-24 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10020522 [exp] 109 / 6e-24 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037272 [exp] 108 / 8e-24 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10030848 [exp] 107 / 1e-23 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12717 [poplar] [flax] Cnd1 non-SMC mitotic condensation complex subunit 1
Representative CDS sequence Show only first row Show all	>Potri.012G055000.3 pacid=42783463 polypeptide=Potri.012G055000.3.p locus=Potri.012G055000 ID=Potri.012G055000.3.v4.1 annot-version=v4.1 ATGGCATCTCCTTCTCTAATGGACACCCTTTTCCAGCGCAGTTTAGATGACATAATCAAAGGTCTTCGCCACCAACAAAGTACCGAATCCACTTTCATAT CCAAAGTTATTGAAGAAATCCGTAGAGAAATCAAAACCACTGACTTGCAAACCAAATCCACTGCCCTTCAAAAACTCACTTACCTCAATTCAATCCACTC CATTGACATGTCATGGGCATCTTTTCACGCCATTGAATGCATCTCATCTCCCACTTTCGCTCACAAAAAGATTGGTTATCTTGCGATCTCTCAGTCCTTC AACGAATCCACACCTGTTATTTTGCTGATCACTAATCAATTAAGGAAGGATCTCAATAGTGGCAATGAGTTTGAGGTGAGTTTGGCTCTTGATTGCTTAT CTAGAATTGGCACTGTTGATTTATGTAGAGATCTTACTTCTGAAGTTTTCACTTTGATGTCCACTTCTAAGGTTTTTGTTAGAAAGAAAGCTGTAAGTGT TGTTTTAAGGCTTTTTGAAAAATACCCAGATGCAGTTAGGGTGTGTTTTAAGAGACTTGTTGAGAGTTTAGAGAGTAGTGATTCGCAAATTGTGTCTGCA GTTGTTGGGGTGTTTTGTGAGCTTGCTTCCAAAGAACCCAGATCGTATCTTCCATTGGCACCTGAGTTTTATAGGATTTTGGTTGATTCGAGGAATAATT GGGTGTTGATTAAGGTCTTAAAGATTTTTGCAAACTTGGCTCCTTTAGAGCCTCGGTTGGCTAAAAGGGTGGTTGAGCCGATTTGTGATCATATGAGAAA GACTGGGGCGAAGTCGATGGTGTTTGAGTGTATTAGGACTGTAGTCACTAGCTTCACTGAGTATGAATCTGCAGTGAAGCTTGCAGCTGTCAAAATTCGT GAGTTTTTATTGGAGGATGATCCGAATCTTAAGTATCTTGGACTGCATGTGCTATCAATTATGGCGCCAAAGAATTTGTGGGCAGTTTTGGAGAATAAGG ATGTTGTGATTCAGTCTTTGAGTGATGAAGATCCGAATATTAAACTCAAGTCTTTGTGTCTGGTTATGGCAATGGTTTCAGAGAGCAATGTGGTGGAAAT TTGCAGGGTTTTGGTTAATTATGCGCTCAAATCTGACCCTGAGTTCTGCAATGAGATTCTTGGTTCAATTTTATCAACTTGTTGCCAGAATGTGTACGAG ATTATAATTGACTTTGATTGGTATGTGTCGCTTCTTGGGGAAATGTCAAGGATTCCACATTGCCAGAAGGGGGAAGAAATTGAGAATCAGCTAATTGATA TTGGTATGAGAGTCAAGGATGTTAGGCCAGAGCTTGTTCGTGTTGGCCGTCACTTACTGATTGATCCAGCATTACTTGGGAATCCTTTTCTGCACAGGAT ATTATCTGCTGCTGCTTGGGTGTGTGGGGAATATGTAGAATTCTCAAGGAACCCAGTTGAACTTATGGAGGCATTACTACAGCCTCGTACTGGTCTCCTG CCTTCATCAATCAGAACAGTTTACATGCAGTCTGCTTTTAAAGTCCTAATCTTTTGTGTATGTTCTTACCTTGTGCAAAAGGAAGATATGACATCAGAAG TTTCAGATTTGGCTTCTAAAAGGGAATGCTCAGAAAGTTCTGATTTAGCATCAGCTAAAGCTCCAGTTGAACGTGACCAAGATGAAGGATTCAATCCAAG GAATTCAAACCAATCTTATGAAGATCCTTCTGTTGTTAATGGTGGGCATGGACAGTTGTCTACATCTGCATTAATGGAGGAAAAGAGTTTCACGCATGAA TCTATTTTTAAACTGTTAAACTTGATGGAATTGGCTATGTGTCCATTATTAGGCAGCTATGATGTTGAAATAGAGGAGAGAGCACGGAATGCACTTGGAT TTATTGAGTTGGTAAAACGGGATATATTGAATCCTTCGCTGCGCGAGGCAAATTTGGAGACCGAAGAAGTGAGTGCTTCCAGAATTGTTGAATGGGTACA TGATGCCTTCTCTGAGGAGCTTGGTCCAGTCTCAATAACTGCCCAGGAGAGAGTACTAATACCAGATGAGCTAGTGCTTAAGGAGAATCTTGCTGACTTG GAAGCAATATGTGGAAATGTAGAATTGCCTTCATCTTGTTCATTTTCTCTTAGAAGTCCATATTATGGAGAAAGTGCTGGCATTTCATTCTCTAACCTCC AAGATGAAGAAGATCCAGAACCATCAACCGAGGCCACTTCCTTGCTTACAGAACACCGGAAGCTGCATGAGTTGTATTACCTCCCTTCAGAGAAGAACGA AACTATAACTATAGCAAATGATTACCCACCTGCCAATTATCCAAGTTCTGGCATTAATACAAATGATGACACCCAAGATTTAGTTACGCTTACAAACCAA TCACTAGTCTCAAAGAGAAAGCCAAACCATGCAAAGCCTAGGCCTGTGGTGGTGAAGTTGGATGAAGGAGATGCAGCACCTGTCACTGCCAAGAAACCAG AGGTGAAAGATGATTTACTTTCTGGTGCCATTCGTGATATACTCTTATTAGGTAATGAAGCTAAACCTGCGTCATCTCAAAGTAATCCATCTGATAAGTC ATCTATTAAGAAAAAAGGGAAGGAGAAACTAAACGTTGATCTATCTGATTCAAAAGAAGATCTAGCTGTTAGAGAACAGCCCAATCCTGAAAATCCAAGT TCAAGGAGAAGTAAACACAGGGGTCATGGTAAAGAGAAAAGCAAAAAAAGTCAAGGGAAGAAGGATGGGGATGGAAGCGAAGATGGTGGGGAGAAAGAAA AACAGAAGAGTAGAAATCGTAATGGTAAACACAAAACTCGTCAAAGAGCTGATGCACCATTAAACGTGGTTGCTCAAACACCACCTATTCCTGATTTTCT CTTATAA
AA sequence Show only first row Show all	>Potri.012G055000.3 pacid=42783463 polypeptide=Potri.012G055000.3.p locus=Potri.012G055000 ID=Potri.012G055000.3.v4.1 annot-version=v4.1 MASPSLMDTLFQRSLDDIIKGLRHQQSTESTFISKVIEEIRREIKTTDLQTKSTALQKLTYLNSIHSIDMSWASFHAIECISSPTFAHKKIGYLAISQSF NESTPVILLITNQLRKDLNSGNEFEVSLALDCLSRIGTVDLCRDLTSEVFTLMSTSKVFVRKKAVSVVLRLFEKYPDAVRVCFKRLVESLESSDSQIVSA VVGVFCELASKEPRSYLPLAPEFYRILVDSRNNWVLIKVLKIFANLAPLEPRLAKRVVEPICDHMRKTGAKSMVFECIRTVVTSFTEYESAVKLAAVKIR EFLLEDDPNLKYLGLHVLSIMAPKNLWAVLENKDVVIQSLSDEDPNIKLKSLCLVMAMVSESNVVEICRVLVNYALKSDPEFCNEILGSILSTCCQNVYE IIIDFDWYVSLLGEMSRIPHCQKGEEIENQLIDIGMRVKDVRPELVRVGRHLLIDPALLGNPFLHRILSAAAWVCGEYVEFSRNPVELMEALLQPRTGLL PSSIRTVYMQSAFKVLIFCVCSYLVQKEDMTSEVSDLASKRECSESSDLASAKAPVERDQDEGFNPRNSNQSYEDPSVVNGGHGQLSTSALMEEKSFTHE SIFKLLNLMELAMCPLLGSYDVEIEERARNALGFIELVKRDILNPSLREANLETEEVSASRIVEWVHDAFSEELGPVSITAQERVLIPDELVLKENLADL EAICGNVELPSSCSFSLRSPYYGESAGISFSNLQDEEDPEPSTEATSLLTEHRKLHELYYLPSEKNETITIANDYPPANYPSSGINTNDDTQDLVTLTNQ SLVSKRKPNHAKPRPVVVKLDEGDAAPVTAKKPEVKDDLLSGAIRDILLLGNEAKPASSQSNPSDKSSIKKKGKEKLNVDLSDSKEDLAVREQPNPENPS SRRSKHRGHGKEKSKKSQGKKDGDGSEDGGEKEKQKSRNRNGKHKTRQRADAPLNVVAQTPPIPDFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	2.44	0.7907
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	2.44	0.8159
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	3.74	0.7687
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	4.00	0.7965
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	4.89	0.7801
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	10.19	0.7624
AT4G01290			unknown protein		Potri.014G089200 [exp]	11.31	0.7329
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	14.49	0.7856
AT3G58050			unknown protein		Potri.016G060200 [exp]	14.96	0.7420
AT4G31570			unknown protein		Potri.018G008600 [exp]	16.37	0.7880

Compare expression of checked genes

Potri.012G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.