Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18290 1639 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 712 / 0 zinc ion binding (.1) AT1G18910 395 / 4e-117 zinc ion binding;zinc ion binding (.1) AT3G62970 182 / 3e-51 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G25560 175 / 3e-48 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 171 / 3e-47 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G18650 167 / 4e-46 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 47 / 8e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 43 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123300 [exp] 1643 / 0 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 1639 / 0 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 436 / 8e-132 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.009G005700 [exp] 171 / 3e-47 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 170 / 3e-47 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G205400 [exp] 167 / 5e-46 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 167 / 7e-46 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 151 / 2e-40 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G032100 [exp] 46 / 0.0001 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005111 [exp] 1600 / 0 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 1453 / 0 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 466 / 3e-150 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008628 [exp] 429 / 2e-129 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042188 [exp] 189 / 5e-55 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 188 / 6e-50 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10012811 [exp] 177 / 4e-49 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10042189 [exp] 191 / 5e-49 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10033969 [exp] 160 / 1e-43 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 95 / 2e-20 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [poplar] [flax] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [poplar] [flax] zf-CHY CHY zinc finger PF14599 [poplar] [flax] zinc_ribbon_6 Zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.012G055100.2 pacid=42784271 polypeptide=Potri.012G055100.2.p locus=Potri.012G055100 ID=Potri.012G055100.2.v4.1 annot-version=v4.1 ATGGCGACGTCGTTACCGGAAATACAGCAGTGTGGAGAGGGAGTAGTTTTGTCAAAATCGGCGAAGAGAGTGGATTCGAAAGGTGGTTTAGAAAGCGAAG AAGAAGACACGAAATCGCCGATTTTGATATTTTTGTACTTTCATAAGGCGATTCGGAATGAGCTTGACACGCTTCACCTATTAACCCTGGCTTTTGCTAC CGGTCATCAGACTGTGGAGATTAAACCGCTCTTTCAACGTTACCGGTTTCTCCGCTTGGTTTATAAGTATCACTCTAATGCTGAAGATGAGGTCATCTTT CCAGCTCTTGATAATCGTGTGAAGAATGTGGCAAACTCGTATTCATTAGAACACAAGGGTGAAAGCAATCTTTTCGATCAATTATTTGAGCTTCTAAATT CTTACACTCAAAATGATGAAAGTTTTCCACGTGAGTTAGCATCCTGTACCGGAGTGCTTCAGACATCACTTAGTCAGCATATGGCCAAGGAAGAGCAGCA GGTTTTTCCCTTGCTTATTGAGAAGTTCTCAGTCGAAGAGCAGGCATCTCTAGTCTGGCAGTTTATATGCAGCATTCCTGTTAACATGTTGGCTGAGTTT CTGCCTTGGCTTTCATCCTCTATTTCACCAGTTGAATACCAAGACATGCTCAAGTGCCTAAGCATGATAATTCCAAAGGAAAAGCTTCTGCAACAGGTTA TTTTCACCTGGATGGAAGGGAAGAAGAGCACAGATGCAGTTGAAAGTTATGTAGATAATCATGAGGTTTTAAGCCAGAAGGATTCTCCTACAAGCATGTT AATTTTGGAACTGGATAAAGAAAAATGTACCTGTAAGAAATCCAAGACTGGGAAAAGGAAATATTTGGAGCCAAGTAATGAGGATTCTGATACCATGGAA ACACATCCAATAGATGAAATTCTTCTTTGGCATAATGCTATTAAGAGGGAGTTAAATGAAATAGCTGACGAGGCTAAGAAGATACAAAGCTCTGGAGATT TTACTAATTTATCAGCATTTGATGAGCGGCTGCAATTCATTGCTGAAGTTTGCATCTTCCACAGTATTGCTGAGGACAAAGTCATATTTCCTGCTGTAGG TGGAGAATTTTCATTCTCAAAAGAGCATGCAGAAGAAGAAACTCAATTTAACGAGTTCAGATGTTTAATTGAAAGCATTCAAAGTGCAGGTGCAAGCTCT AACTCTGTAGCTGATTTTTATGCAAAGCTATGCTCGCATGCTGATCAAATAATAGAAACTATACAAAGGCACTTCCACAATGAGGAAATTCAGGTTCTCC CACTTGCCCGTCAGCACTTTAGCTTCAGAAAACAGAAGGAACTTTTATACCAGAGCTTGTGCATGATGCCTTTGAAAGTGATTGAGCGTGTCTTGCCATG GCTGGTGGGGTTGTTAACAGAACACGAGGCCAGGAATTTCCTAAAAAATATGCAATCAGCAGCTCCAGCAGTAGACACAGCTCTTGTAACTCTTTTTACT GGTTGGGCATGCAAGGGTCGTAGCCAAGGTGTGTGTTTGTCTTCAAGTGTAATTCATTGCTGTCCTGCTGATATTGAGGAAAAAATTGTTCCATCATGCT GTGCGCGTTTGTGTGCGTTTTGTTCAAAGGATAGTCCTGTGTCAATCAGTGAAGGTATCAAAAGGCCACAAAAAAGAAACATCTCAGGATCTTGCAAAAA TAGCAATGTCTGCAACCCCATAGAGACTCCGGATGCCCATGAACCATCTTGTTCTGATCGGTCTTGTTGTGTCCCAGGTTTGGGAGTAAACAGCAAAAAT CTGGGATTGACTTCTCTTTCCACAACCAAGTCTTTGCGATCATTATCTGTCAAATCCTCTGCTCCAGCCCTTAACTCCAGTCTTTTTGTCTGGGAATCAG ATATGGTCTCTTCTGATTTGGGGTATACAGAACGACCGATAGATACTATTTTTAAATTTCATAAAGCCATAAGCAAAGACTTGGAGTATCTTGATGTTGA ATCTGGAAACCTCAGTGATTGCGATGAGGCATTTCTTCAGCAGTTCATTGGAAGATTCCGTCTATTATGGGGCTTATACAGAGCTCATAGCAATGCTGAG GATGAAATTGTTTTTCCAGCGTTAGAGTCTAAAGAGGCACTTCATAATGTTAGCCATTCTTATACACTAGACCATAAGCAGGAGGAAGAATTATTTGAAG ACATTTCATTTGTCCTTTCTGAGCTTTCACACCTTCATGAAAATTTGCAAAAGTTTCAAGTGATGGAGGACCCAACAGGAAGTACTCTGGAGCATTCTAT TGGCCATCTCGATGATTATATGGGAAAGTACAATGAGCTAGCCACTAAGATTCAATGGATGTGCAAATCTATAAGAGTTACTTTAGATCAACATATTAAT AGAGAAGAACTTGAGTTGTGGCCATTGTTTGACAGGCATTTTTCAATTCAGGAGCAAGACAGGTTAGTTGGTCGCATAATTGGGACGACGGGGGCTGAAG TACTGCAATCTATGTTGCCTTGGGTTACTTCTGCCCTGACTCAAGATGAACAAAATAAAATGATGGACACATGGAAACAGGCAACAAGAAACACAATGTT TAATGAGTGGCTTAATGAATGCTGGAAAGAAACTTCAGCATCACTTGTGCAGACTGAACCATCAGGAGATACAATTTATAAAGAAGGCAGAGAGTTTCAA GAAAGTTTAGACCAAAGTGATCTGTTTAAGCCTGGGTGGAAAGATATCTTCCGCATGAATCAAAATGAGCTTGAATCTGAGATTAGAAAGGTTTATAGGG ACTCGACTCTTGATCCTAGGAGAAAATCATATCTTGTTCAAAATCTTCTAACAAGCCGCTGGATAGCTGCTCAGCAAAAGTCACCTCAAGAAACTGCAGG GGAAAATTCTACTGCTGCTGATGTAATGGGATGCTTCCCAACATTTCGAGACCCTGAAAAACAAGTATATGGGTGTGAACACTACAAGAGAAGCTGTAAA CTTCGGGCTTCTTGTTGTGGTAAGCTGTTTGCTTGCAGATTTTGCCATGACAAAGTTAGTGATCACACTATGGACAGAAAAGCAACATTGGAAATGATGT GCATGCGCTGCCTGAAGGTCCAACCAGTAGGGCAAATCTGTGCAACACCAACATGCAATGGTCTTTCAATGGCGAAATATTATTGCAACATATGCAAGTT TTTTGATGATGAAAGGAGTGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGGAAGGGTCTTGGTATTGATTTCTTTCATTGCATGACTTGCAAC TGTTGTCTGGGGATTAAGTCAGTGAACCACAAGTGCCTGGAGAAAGGTTTAGAAACTAACTGCCCCATTTGCTGCGATTTTTTATTCACATCAAGTGCAC CAGTCAGAGCTTTACCTTGTGGCCATTATATGCATTCCTCATGCTTTCAGGCATATACTTGCAGTCACTATACTTGTCCAATATGCTGCAAATCCTTGGG AGATATGGCGGTTTATTTCGGCATGCTTGATGCATTGTTGGCTGCCGAGGAGCTGCCAGAGGAATACAGGGATCGTTGTCAGGATATACTGTGCAATGAT TGTGATCAAAAGGGGTCTGCACAATTCCACTGGTTATATCACAAGTGTGGATTATGTGGGTCTTATAACACCCGGGTAATCAAGAATGAGGTGACCCATC CCATCTGCACCACTCGTCTCTGA
AA sequence Show only first row Show all	>Potri.012G055100.2 pacid=42784271 polypeptide=Potri.012G055100.2.p locus=Potri.012G055100 ID=Potri.012G055100.2.v4.1 annot-version=v4.1 MATSLPEIQQCGEGVVLSKSAKRVDSKGGLESEEEDTKSPILIFLYFHKAIRNELDTLHLLTLAFATGHQTVEIKPLFQRYRFLRLVYKYHSNAEDEVIF PALDNRVKNVANSYSLEHKGESNLFDQLFELLNSYTQNDESFPRELASCTGVLQTSLSQHMAKEEQQVFPLLIEKFSVEEQASLVWQFICSIPVNMLAEF LPWLSSSISPVEYQDMLKCLSMIIPKEKLLQQVIFTWMEGKKSTDAVESYVDNHEVLSQKDSPTSMLILELDKEKCTCKKSKTGKRKYLEPSNEDSDTME THPIDEILLWHNAIKRELNEIADEAKKIQSSGDFTNLSAFDERLQFIAEVCIFHSIAEDKVIFPAVGGEFSFSKEHAEEETQFNEFRCLIESIQSAGASS NSVADFYAKLCSHADQIIETIQRHFHNEEIQVLPLARQHFSFRKQKELLYQSLCMMPLKVIERVLPWLVGLLTEHEARNFLKNMQSAAPAVDTALVTLFT GWACKGRSQGVCLSSSVIHCCPADIEEKIVPSCCARLCAFCSKDSPVSISEGIKRPQKRNISGSCKNSNVCNPIETPDAHEPSCSDRSCCVPGLGVNSKN LGLTSLSTTKSLRSLSVKSSAPALNSSLFVWESDMVSSDLGYTERPIDTIFKFHKAISKDLEYLDVESGNLSDCDEAFLQQFIGRFRLLWGLYRAHSNAE DEIVFPALESKEALHNVSHSYTLDHKQEEELFEDISFVLSELSHLHENLQKFQVMEDPTGSTLEHSIGHLDDYMGKYNELATKIQWMCKSIRVTLDQHIN REELELWPLFDRHFSIQEQDRLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATRNTMFNEWLNECWKETSASLVQTEPSGDTIYKEGREFQ ESLDQSDLFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKSYLVQNLLTSRWIAAQQKSPQETAGENSTAADVMGCFPTFRDPEKQVYGCEHYKRSCK LRASCCGKLFACRFCHDKVSDHTMDRKATLEMMCMRCLKVQPVGQICATPTCNGLSMAKYYCNICKFFDDERSVYHCPFCNLCRVGKGLGIDFFHCMTCN CCLGIKSVNHKCLEKGLETNCPICCDFLFTSSAPVRALPCGHYMHSSCFQAYTCSHYTCPICCKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCND CDQKGSAQFHWLYHKCGLCGSYNTRVIKNEVTHPICTTRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.012G055100 [exp]	0	1
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016801 [exp]	3.46	0.7386
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	14.69	0.7614
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	32.98	0.7537
AT5G57610			Protein kinase superfamily pro...		Potri.006G170700 [exp]	43.26	0.7000
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	57.82	0.6969
AT1G73170			P-loop containing nucleoside t...		Potri.001G375900 [exp]	66.69	0.7182
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.008G067600 [exp]	84.48	0.6829
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	166.98	0.6679
AT3G13180			NOL1/NOP2/sun family protein /...		Potri.001G368500 [exp]	199.64	0.6467
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.001G036000 [exp]	212.01	0.6660

Compare expression of checked genes

Potri.012G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.