Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18295 109 / 2e-29 Protein of unknown function (DUF1639) (.1) AT1G48770 91 / 2e-22 Protein of unknown function (DUF1639) (.1) AT1G25370 71 / 1e-14 Protein of unknown function (DUF1639) (.1) AT1G68340 61 / 5e-11 Protein of unknown function (DUF1639) (.1) AT3G60410 61 / 1e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT4G20300 45 / 1e-05 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G55340 44 / 2e-05 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122700 [exp] 106 / 1e-27 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 79 / 2e-17 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.002G136200 [exp] 65 / 3e-12 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.014G044800 [exp] 64 / 6e-12 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.014G044700 [exp] 45 / 7e-06 ND / Potri.014G044600 [exp] 42 / 9e-05 ND / Potri.001G073400 [exp] 43 / 0.0001 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 43 / 0.0001 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035144 [exp] 75 / 4e-16 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10038942 [exp] 62 / 8e-13 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10010984 [exp] 66 / 1e-12 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10027232 [exp] 60 / 2e-11 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1) Lus10004378 [exp] 61 / 8e-11 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 45 / 3e-05 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 44 / 3e-05 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10040176 [exp] 42 / 0.0001 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10010312 [exp] 41 / 0.0002 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 39 / 0.0006 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [poplar] [flax] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Potri.012G055200.1 pacid=42783047 polypeptide=Potri.012G055200.1.p locus=Potri.012G055200 ID=Potri.012G055200.1.v4.1 annot-version=v4.1 ATGGCTTCCTCATCATCTCAAGAGAGATCAAAGCAACTGCACAACTTTTCTTTGCCTTGTTTGAGATGGGGCAATCAGAGACTCCTTAGATGTGTCAAAG TCAGTGATGACATTATCAATAGCAATGATGATAATCAACACCAGCAAGGATTTCAATCAAAACCCATCAATTTGGTTTCTTACAAGAATTATAAACCAAA CCCGATTCAAGTCAACAATGCTGCTGCCAAAAGATTGAAGCTTCCTTCTTCTTCTCCTTTTGTTGTTGAGGAAGAGAAAGGAGGAGGAAATATTGATGAA TCTCCAAGACCCTGGAATTTGAGGACTAGAAGGGCAGCTTGTAAGGCTCCACTAAGAATCGAAGAGCAGCCGTCAAGGAGAAATGTTGTTGTTTCTCCAA GGGGGTATTTAGAGATTGATTCACCAAAGAAATATTATGAGAGTTTGATGGTGAAGAGGCAGCAGAGTTTCGAGATGAAGGAGAAAGTCAAGTTTTCGGT TTCTTTATCAAAGAGAGAGATTGAAGAGGATTTTCTTGAGATGGTTAGAATTAGGCCACCAAGGAGGCCTAAGAAGAGGCCTCGAATCGTACAGAAGAAT TTGGATTCAATTTTCCCTGGGTTGTGGCTAGCTGAAATTACACCAGATTCATACAAGGTTCAAGAAGTGCCTGAATCATGA
AA sequence Show only first row Show all	>Potri.012G055200.1 pacid=42783047 polypeptide=Potri.012G055200.1.p locus=Potri.012G055200 ID=Potri.012G055200.1.v4.1 annot-version=v4.1 MASSSSQERSKQLHNFSLPCLRWGNQRLLRCVKVSDDIINSNDDNQHQQGFQSKPINLVSYKNYKPNPIQVNNAAAKRLKLPSSSPFVVEEEKGGGNIDE SPRPWNLRTRRAACKAPLRIEEQPSRRNVVVSPRGYLEIDSPKKYYESLMVKRQQSFEMKEKVKFSVSLSKREIEEDFLEMVRIRPPRRPKKRPRIVQKN LDSIFPGLWLAEITPDSYKVQEVPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18295			Protein of unknown function (D...		Potri.012G055200 [exp]	0	1
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	4.24	0.8349	XYL4.2
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.018G031400 [exp]	6.63	0.8115
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	9.16	0.7309
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	18.13	0.7903
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	19.07	0.7967
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	20.92	0.8003
AT4G12340			copper ion binding (.1)		Potri.001G118700 [exp]	21.49	0.7726
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.006G250000 [exp]	23.47	0.7434
AT4G32930			unknown protein		Potri.006G233500 [exp]	23.66	0.7115
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G185900 [exp]	24.49	0.7229

Compare expression of checked genes

Potri.012G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.