Plant FIBer expression Database

Potri.012G055300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48780 105 / 2e-27 unknown protein
AT3G18300 97 / 5e-24 unknown protein
AT1G68330 64 / 9e-12 unknown protein
AT1G67050 51 / 2e-07 unknown protein
AT5G38320 42 / 0.0002 unknown protein
AT4G34419 39 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G045700
[exp]
325 / 3e-113 AT1G48780 107 / 8e-28 unknown protein
Potri.008G122300
[exp]
132 / 2e-37 AT1G68330 134 / 6e-38 unknown protein
Potri.010G122800
[exp]
121 / 4e-33 AT1G68330 136 / 7e-39 unknown protein
Potri.004G098700
[exp]
95 / 2e-23 AT1G67050 117 / 6e-32 unknown protein
Potri.017G115700
[exp]
94 / 6e-23 AT1G67050 112 / 6e-30 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009633
[exp]
90 / 5e-21 AT1G48780 93 / 5e-22 unknown protein
Lus10009004
[exp]
90 / 7e-21 AT1G48780 98 / 7e-24 unknown protein
Lus10041430
[exp]
67 / 8e-13 AT1G68330 111 / 4e-29 unknown protein
Lus10034341
[exp]
60 / 3e-10 AT1G68330 117 / 4e-31 unknown protein
Lus10009160
[exp]
56 / 4e-09 AT1G67050 152 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G055300.1 pacid=42782865 polypeptide=Potri.012G055300.1.p locus=Potri.012G055300 ID=Potri.012G055300.1.v4.1 annot-version=v4.1
ATGTGCTCGGAAACAAGCCCTCGAATATCATTCTCTAATGGTCTTGGACATGACAGAGAAATTGAGCAAGTGTCAAGAAGGGACATAAAATTATTGGACT
CAAATTCTGATTTTGAGTTCAGTATTTGCAGTAGTTTAGGCCATGAATCGTCTCCGGCAGACGAGCTTTTCGCAGATGGCATGATCCTGCCAGTTCAAAT
TCCAGAAAGAATTACTGCCTCAAAGCAAATACATAAATATGAATCTCCACGAAAAGATTCCCTTCCTCCTCTTCCATTTCCTTCTACTAATGGCAATTTA
ACTAAAGATAGCATGAGGGAATTGATGGTTGTGAATTCTGATCAGTTGAAGGAAAAGCCTCAGTCCAAGTCTTTCTGGGGATTCAAGAGAAGTAGTAGTC
TCAACAGTGATATCAAGAGAAGCCTTTGCTCATTACCACTTTTATCACGGAGCAGCTCAACTGGTTCTGTGCCATATGCAAAGAGAACAACATTGAAGGA
TATGCGCAAGAACAATTCACAGAAGCAACAATCAGCTGTCATGGCAAAGTCAGAACCATATCCATCATCATCGTCTTCGGAGTCTAGTTTTGTTTATTCA
TTACCACAAAAGCCTCCATTGAAGAAGGCAGGGTCTTATGGTAAGATTAGTCCTGTGTTTAATTTGCCACCACCTTACATTTACAAAGGAACTGCAAATC
TTTTTGGTTTGGGATCCTTTTTGCGCAATGGAAAGGAGAAGAAGAGCAGAAAGTGA
AA sequence
>Potri.012G055300.1 pacid=42782865 polypeptide=Potri.012G055300.1.p locus=Potri.012G055300 ID=Potri.012G055300.1.v4.1 annot-version=v4.1
MCSETSPRISFSNGLGHDREIEQVSRRDIKLLDSNSDFEFSICSSLGHESSPADELFADGMILPVQIPERITASKQIHKYESPRKDSLPPLPFPSTNGNL
TKDSMRELMVVNSDQLKEKPQSKSFWGFKRSSSLNSDIKRSLCSLPLLSRSSSTGSVPYAKRTTLKDMRKNNSQKQQSAVMAKSEPYPSSSSSESSFVYS
LPQKPPLKKAGSYGKISPVFNLPPPYIYKGTANLFGLGSFLRNGKEKKSRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48780 unknown protein Potri.012G055300
[exp]
0 1
AT1G16130 WAKL2 wall associated kinase-like 2 ... Potri.009G154300
[exp]
1.41 0.9541
AT5G03990 unknown protein Potri.006G045900
[exp]
2.23 0.9598
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.009G155050
[exp]
6.00 0.9408
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.001G255950
[exp]
16.70 0.9489
AT3G09925 Pollen Ole e 1 allergen and ex... Potri.006G119100
[exp]
22.47 0.9422
AT3G61670 Protein of unknown function (D... Potri.014G095700
[exp]
25.39 0.8637
Potri.003G131550
[exp]
28.98 0.9394
AT1G21280 unknown protein Potri.001G247404
[exp]
31.55 0.9170
AT5G42220 Ubiquitin-like superfamily pro... Potri.002G013500
[exp]
34.78 0.9051
AT2G04100 MATE efflux family protein (.1... Potri.017G120500
[exp]
36.74 0.9385

Potri.012G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.