Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 364 / 2e-120 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 357 / 1e-117 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21390 361 / 2e-117 B120 S-locus lectin protein kinase family protein (.1) AT4G23230 350 / 4e-117 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G21410 349 / 1e-114 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT3G45860 348 / 2e-114 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G11530 344 / 7e-113 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23160 357 / 1e-112 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT1G11330 346 / 1e-111 S-locus lectin protein kinase family protein (.1.2) AT4G23130 341 / 1e-111 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 374 / 2e-124 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 351 / 2e-119 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 360 / 4e-119 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G413800 [exp] 364 / 1e-118 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G025200 [exp] 359 / 2e-118 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G037300 [exp] 361 / 2e-117 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G026100 [exp] 357 / 2e-117 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 355 / 3e-117 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G027900 [exp] 357 / 5e-116 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009631 [exp] 565 / 0 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10038940 [exp] 517 / 0 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10027230 [exp] 393 / 1e-135 AT4G21390 278 / 2e-90 S-locus lectin protein kinase family protein (.1) Lus10007632 [exp] 362 / 2e-119 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 360 / 1e-118 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 353 / 5e-116 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018408 [exp] 358 / 3e-115 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 334 / 1e-112 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 346 / 1e-111 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007633 [exp] 341 / 2e-111 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G055500.1 pacid=42783097 polypeptide=Potri.012G055500.1.p locus=Potri.012G055500 ID=Potri.012G055500.1.v4.1 annot-version=v4.1 ATGGTCCATGTCTTGATGGGCCTTTTCTCCAATCTCTGCGCTTGCTTGCAGACTAAACTCAGAATTCGTAGACACAACGCTGCCGAAAGCGCCCCCGATG ACGTCGTTGAGACGAATGACTTGTTCTTTGAGCTCCGTACTCTTGAATTAGCTACTAATTTCTTCTCCGAGTTGAATCAACTGGGTCATGGAGGATTTGG TCCCGTTTACAAGGGATTGATACCCAATGGGCAAGAAGTTGCAGTGAAGAAGCTTTCATTAACTTCGAGACAGGGAATCAGAGAATTTACGAATGAGGTG AAACTGCTACTAAAAATTCAGCACAAGAATTTGGTAAGTTTGTTGGGTTGTTGTGCTCAAGGACCAGAGAAGATGCTTGTTTACGAATATCTTCCAAATA GAAGTCTCGATTACTTTCTGTTTGACAAAGTGAAATCTACACGCCTGGATTGGACAACGCGGTTCCAAATAGTTACAGGTGTGGCAAGAGGTCTCCTCTA CTTGCACGAAGAAGCCCCTGAAAGGATCATTCACAGAGACATCAAAGCCAGTAATATTTTGCTGGACGAAAATTTGAATCCAAAGATATCAGATTTTGGC TTGGCAAGGCTCTTTCCTGGTGATGACACCCATATGAATACATTTAGAATTTCTGGTACTTATGGTTATATGGCCCCTGAATATGCAATGCATGGATATT TGTCTGTTAAGACAGATGTTTTTAGTTATGGAGTTCTGGTGCTCGAGATTGTAAGTGGGAGAAAGAATCATGATCGTCAACTTGGTGCAGAGAAGGCAGA TCTCTTGAACTATACGTGGATGCTTTACCAAGGAGGCAAGACATTGGAGTTAGTTGATCCAAGCCTTGCCAGGTGCAATTGGGATGAGGCAGCCATGTGC ATTCAACTGGGGTTGCTATGCTGCCAACAGAGCATTGCAGATAGGCCTGACATGAACTCAGTTCATCTCATGCTTTCAAGTGACTCGTTTACTTTACCCA AACCTGGTAAACCTGGAATTCAAGGTCGTGGGGGTCGTTGGACAACTACCACTACTTCTGCTCTCACTAACAGTGCTACAGCTACCAATGCTAGTACTAC AAACACTGGCGCTACCAGGGTTTCTGGAGGTAATAGTTTTATTGATGAGTATTCTAGAAATTCTATGTCTGTTTCTTCAATTGAAGAAGGCAGATAA
AA sequence Show only first row Show all	>Potri.012G055500.1 pacid=42783097 polypeptide=Potri.012G055500.1.p locus=Potri.012G055500 ID=Potri.012G055500.1.v4.1 annot-version=v4.1 MVHVLMGLFSNLCACLQTKLRIRRHNAAESAPDDVVETNDLFFELRTLELATNFFSELNQLGHGGFGPVYKGLIPNGQEVAVKKLSLTSRQGIREFTNEV KLLLKIQHKNLVSLLGCCAQGPEKMLVYEYLPNRSLDYFLFDKVKSTRLDWTTRFQIVTGVARGLLYLHEEAPERIIHRDIKASNILLDENLNPKISDFG LARLFPGDDTHMNTFRISGTYGYMAPEYAMHGYLSVKTDVFSYGVLVLEIVSGRKNHDRQLGAEKADLLNYTWMLYQGGKTLELVDPSLARCNWDEAAMC IQLGLLCCQQSIADRPDMNSVHLMLSSDSFTLPKPGKPGIQGRGGRWTTTTTSALTNSATATNASTTNTGATRVSGGNSFIDEYSRNSMSVSSIEEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.012G055500 [exp]	0	1
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Potri.004G034100 [exp]	1.41	0.8729
					Potri.006G063600 [exp]	4.58	0.8637
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.008G213400 [exp]	5.19	0.8189
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	6.78	0.8760
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	9.89	0.8446
AT3G59430			unknown protein		Potri.017G029800 [exp]	10.81	0.8025
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	19.10	0.7861
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	20.49	0.8524	Pt-NAC2.1,NAC049
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	20.68	0.7772
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.019G010200 [exp]	22.44	0.8170

Compare expression of checked genes

Potri.012G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.