Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73830 216 / 7e-70 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2) AT1G18400 210 / 2e-67 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) AT1G25330 169 / 8e-52 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 144 / 1e-41 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G07340 138 / 8e-38 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 135 / 1e-36 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 135 / 1e-36 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 132 / 2e-36 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 132 / 3e-36 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 126 / 9e-35 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046300 [exp] 426 / 2e-152 AT1G18400 192 / 3e-60 BR enhanced expression 1 (.1) Potri.017G115300 [exp] 205 / 2e-65 AT1G25330 151 / 4e-45 HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G099400 [exp] 196 / 5e-62 AT1G18400 152 / 7e-45 BR enhanced expression 1 (.1) Potri.012G104900 [exp] 140 / 3e-39 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G248500 [exp] 141 / 2e-38 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 137 / 6e-37 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 137 / 7e-37 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 134 / 1e-35 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G104200 [exp] 129 / 5e-35 AT5G50915 163 / 9e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038939 [exp] 232 / 7e-76 AT1G73830 193 / 9e-61 BR enhanced expression 3 (.1.2) Lus10009673 [exp] 194 / 1e-61 AT1G73830 204 / 1e-65 BR enhanced expression 3 (.1.2) Lus10009034 [exp] 187 / 7e-59 AT1G73830 186 / 2e-58 BR enhanced expression 3 (.1.2) Lus10013052 [exp] 138 / 3e-37 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 134 / 4e-37 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 135 / 2e-36 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 131 / 4e-36 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10002337 [exp] 133 / 5e-36 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 130 / 9e-36 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10017602 [exp] 128 / 9e-36 AT1G18400 122 / 7e-34 BR enhanced expression 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G055700.1 pacid=42784284 polypeptide=Potri.012G055700.1.p locus=Potri.012G055700 ID=Potri.012G055700.1.v4.1 annot-version=v4.1 ATGGCTGATTTCACAGCAGATTTGCAAAGCTTTAGGCCACCATTTCCTTTCTTAGATATTGATCCAAGCATGGTGGCGTTAAGCCAATTCACAGAAGTAA GTCAAGCCATCCTAGATAATCCAAGCGTGAATAATATTCATAGCTTCATGCCTTTCACTAGTGACAACTTCTTCAGCCATCAAGCACCAGAATTCCCTGG AAACTTAGCGGAAGGTTTTGCTGGTATTTTCCATCAAAACGACCAGAACGTTATGCCAGTTTCTCAGCCCTTTACCACACCTGGAAATGAAAGCGAATTC CAAGAAAGCAAGAAGAGAAAGGCAATGGATGTGTCTGAAAGCAGTTCTATGAACTCATCTCCTCAAGTTTCTGAGAGTGGGAGTAAGAGGAGAAATGTAA ATAGCTCAAGAAGGGGAAAGGGAGTGAAAAGCAATGAGGATGGGAAACCAAAAGACGTTGTTCATGTTAGAGCTAGGAGAGGTCAAGCCACTGATAGCCA CAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAGATTAAGATGCTTGCAAGATATAGTGCCTGGCTGCTACAAGACCATGGGCATGGCAGTA ATGTTGGATGAGATAATTAATTATGTCCAGTCCTTGCAAAATCAAGTTGAGTTTCTATCCATGAAGCTCACTGCAGCAAGCACATTCTACGACTTCAACG CGGAAACAGATGCTATTGAAACAATGCAGAGGGCAAAAGCACAGGAGGCAAAAGAGCTGCAAAGAGCTATGAGAGAAGGATCCGGAGGGTTTGCTCACAT CCACTCAACATGGTCCCTCTGA
AA sequence Show only first row Show all	>Potri.012G055700.1 pacid=42784284 polypeptide=Potri.012G055700.1.p locus=Potri.012G055700 ID=Potri.012G055700.1.v4.1 annot-version=v4.1 MADFTADLQSFRPPFPFLDIDPSMVALSQFTEVSQAILDNPSVNNIHSFMPFTSDNFFSHQAPEFPGNLAEGFAGIFHQNDQNVMPVSQPFTTPGNESEF QESKKRKAMDVSESSSMNSSPQVSESGSKRRNVNSSRRGKGVKSNEDGKPKDVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAV MLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNAETDAIETMQRAKAQEAKELQRAMREGSGGFAHIHSTWSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	0	1
					Potri.006G037801 [exp]	1.41	0.8987
					Potri.008G164250 [exp]	2.00	0.8629
AT4G02220			zinc finger (MYND type) family...		Potri.002G201200 [exp]	5.29	0.8167
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.002G161000 [exp]	6.00	0.7950	Pt-UBC4.1
					Potri.007G093850 [exp]	6.70	0.8058
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	6.92	0.8275
AT3G63430			unknown protein		Potri.005G216300 [exp]	7.54	0.7829
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069400 [exp]	8.12	0.7953
AT5G24580			Heavy metal transport/detoxifi...		Potri.015G003900 [exp]	8.94	0.8024
AT3G61180			RING/U-box superfamily protein...		Potri.014G075000 [exp]	9.48	0.7605

Compare expression of checked genes

Potri.012G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.