Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48840 906 / 0 Plant protein of unknown function (DUF639) (.1) AT3G18350 884 / 0 Plant protein of unknown function (DUF639) (.1) AT5G23390 496 / 6e-167 Plant protein of unknown function (DUF639) (.1) AT2G21720 272 / 5e-81 Plant protein of unknown function (DUF639) (.1) AT1G71240 226 / 2e-63 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046500 [exp] 1190 / 0 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 511 / 7e-173 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 300 / 2e-91 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 227 / 7e-64 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013865 [exp] 993 / 0 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 966 / 0 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 932 / 0 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 497 / 6e-167 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 298 / 4e-91 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 298 / 4e-91 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 220 / 2e-61 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 194 / 1e-51 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10017360 [exp] 45 / 6e-06 AT1G48840 47 / 1e-07 Plant protein of unknown function (DUF639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF04842 [poplar] [flax] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Potri.012G055800.3 pacid=42783013 polypeptide=Potri.012G055800.3.p locus=Potri.012G055800 ID=Potri.012G055800.3.v4.1 annot-version=v4.1 ATGGCTACACCTACTGTAAGCAAAACGAGAAGTATGCTTGAGGGTTTAGTAAGAGAAGGATCATTTAAATGGCTACTTGGCAAGAGAAGTTCTTTTAATG AAGAACTCGAAGAGATGGAAAGATCTCCATCAGCTGGCAGGAATTGGATAGCTGAGCTCTCCCCACTTGCTAATCTGGTTGTTCGTAGATGCTCAAAAAT CCTTGGCGTTTCTGCAAGTGAACTTCAAGAAAGCTACAATGCAGAGGCTTCTGATTCATTAAAACATCATTCCTGTTATGCGAGGAACTTCTTGGAATAC TGTTGCTTCAGAGCACTGGCTTTATCTACTCAAGTAACCGGTCATCTAGCTGATAAAAAGTTCCGGCGGTTAACATATGACATGATGCTAGCTTGGGAGA CTCCAGCAGTTGCTAGCCAACCATTGCTCAATGTAGATGAGGACTTCACAGTTGGTCTAGAGGCCTTCTCTCGAATAGCTCCAGCAGTTCCAATCATTGC CAATGTGATTATCAGTGAAAATCTTTTTGAAGTGCTTACTGTGGGAACTGATGGTCGGCTTCAATTCTCCATCTATGAAAAGTACCTTAGTGGACTAGAA AGGGCAATAAAAAAGATGAAGACCCAATCAGATTCATCACTCCTTTCTACAGTGCGATTGTCAAGAAGGGAGAAGATTCTGGAAGTAGATGGAACAGTGA CGACCCAACCAGTTCTTGAACATGTTGGAATATCGACATGGCCAGGTCGGGTAACTCTCACAGATCATGCACTGTACTATGAAGCTCTCCGTGTTGTATC CTATGACAAGCCGAAAACATATGATTTGGCAGATGACCTAAAACAGATTGTTAATCCTGAGTTGACTGGACCATGGGGTACTCGGCTTTTTGACAAGGCA GTCTTGTATAAATCTATTTCCTTATCAGAGCCAGCCGTGATAGAGTTTCCAGAGCTTAAAGGCCATACTCGTCGTGATTACTGGTTGGCAGTTATCCGGG AAATTTTATTTGTTCACAGATTTATAAAAAAGTTCAAGATCTCTGGAGTTGAAAGGGATGAAGCACTTTCATTAGCTGTACTTGGAATTCTGCGACTTCA AGCAATTCAAGAAATTATTTCTGTAAATTCTGTTCACTGTGAAACGCTTCTCATGTTTAATCTTTGTGATCAACTTCCTGGTGGCGATTTGATACTGGAA ACCCTGGCAAACATATCATCCTTAAGAAAATTAGATCGAACTAACAGTGACAAGACTGGAGGTGGGATGCATTCAATCTCTGCAAGGGCCATGGTTTCCA ATTTAGGGTTCATGCTAGGAACAAGTTCAACTGATCTGAATGAGGCTGGGCTTGTTGTTGGTGAGACATCTGTGGGAGAGATGAGTTCATTGGAGAAGGT GGTTAAGGAATCGCAAAACAGCTTCAAAAAAGCAGTGCTGGCACAAGAAACAGTTGATGGAGTAAAAGTAGATGGCATTGACACCAATTTGGCAGTGATG AAGGAGTTACTTCTCCCTGTTATGGAAGTTGGGACATGGCTTATTTCCTTGATACACTGGGATGACCCCATGAAGTCTTTGGTGTTCTGTTTGGTTCTTA CTTATGTCATTTGGAGGGGATGGCTGGGCTATGCGTTTGGATTAATGATCATCTTTCTTGCTATCTTTATGGTGCTCACACGATTTTGTAACCAAGGAAG GCCTGTTGAAGAGATCAAGGTAACAGCACCTCCACCAATGAACACAGTGGAGCAGCTTTTAGCTGTCCAGGATGCTATTTCTCAAGCTGAACAGTACATC CAAGATGGAAACATTGTCCTCCTCAAGTTTCGTGGCCTGCTGTTGTCCATTTTCCCACAGGCAAGCGAGAAGTTTGCGTTCACTCTCCTGGGCGTTGCTT TGATCCTGGCTTTCATGCCTAGCAAGTACATTATTCTGTTGACCTTCTTAGAGACATTTACAAGATATTCTCCTCCAAGGACAGCAAGCACAGAAAGATG GACAAGGAGACTAAGAGAGTGGTGGTTCAGCATACCGGCGGCTCCTGTAGTTCTTGAAAGAGAAAAGGAGGACAAGAAGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.012G055800.3 pacid=42783013 polypeptide=Potri.012G055800.3.p locus=Potri.012G055800 ID=Potri.012G055800.3.v4.1 annot-version=v4.1 MATPTVSKTRSMLEGLVREGSFKWLLGKRSSFNEELEEMERSPSAGRNWIAELSPLANLVVRRCSKILGVSASELQESYNAEASDSLKHHSCYARNFLEY CCFRALALSTQVTGHLADKKFRRLTYDMMLAWETPAVASQPLLNVDEDFTVGLEAFSRIAPAVPIIANVIISENLFEVLTVGTDGRLQFSIYEKYLSGLE RAIKKMKTQSDSSLLSTVRLSRREKILEVDGTVTTQPVLEHVGISTWPGRVTLTDHALYYEALRVVSYDKPKTYDLADDLKQIVNPELTGPWGTRLFDKA VLYKSISLSEPAVIEFPELKGHTRRDYWLAVIREILFVHRFIKKFKISGVERDEALSLAVLGILRLQAIQEIISVNSVHCETLLMFNLCDQLPGGDLILE TLANISSLRKLDRTNSDKTGGGMHSISARAMVSNLGFMLGTSSTDLNEAGLVVGETSVGEMSSLEKVVKESQNSFKKAVLAQETVDGVKVDGIDTNLAVM KELLLPVMEVGTWLISLIHWDDPMKSLVFCLVLTYVIWRGWLGYAFGLMIIFLAIFMVLTRFCNQGRPVEEIKVTAPPPMNTVEQLLAVQDAISQAEQYI QDGNIVLLKFRGLLLSIFPQASEKFAFTLLGVALILAFMPSKYIILLTFLETFTRYSPPRTASTERWTRRLREWWFSIPAAPVVLEREKEDKKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48840			Plant protein of unknown funct...		Potri.012G055800 [exp]	0	1
AT5G43150			unknown protein		Potri.008G152200 [exp]	12.80	0.7465
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.005G249300 [exp]	14.69	0.6607
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.012G124400 [exp]	14.83	0.6869
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.009G004800 [exp]	22.71	0.6810
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.005G081200 [exp]	32.72	0.6885
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.006G005600 [exp]	35.56	0.7238
AT3G61180			RING/U-box superfamily protein...		Potri.014G075000 [exp]	40.80	0.6485
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	41.35	0.7181
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	44.27	0.6226
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	44.82	0.7077

Compare expression of checked genes

Potri.012G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.