Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18360 73 / 2e-15 VQ motif-containing protein (.1) AT1G68450 54 / 4e-09 PDE337 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) AT1G21326 50 / 1e-07 VQ motif-containing protein (.1) AT1G21320 49 / 1e-06 nucleotide binding;nucleic acid binding (.1.2) AT3G18690 46 / 5e-06 MKS1 MAP kinase substrate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046600 [exp] 152 / 8e-47 AT3G18360 81 / 2e-18 VQ motif-containing protein (.1) Potri.010G123700 [exp] 77 / 3e-17 AT1G68450 64 / 9e-13 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.005G057800 [exp] 56 / 2e-09 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1) Potri.005G189300 [exp] 54 / 6e-09 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1) Potri.002G070600 [exp] 53 / 1e-08 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1) Potri.006G199300 [exp] 44 / 6e-06 AT1G68450 60 / 1e-12 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.007G110100 [exp] 43 / 4e-05 AT3G18690 119 / 3e-33 MAP kinase substrate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009033 [exp] 95 / 4e-24 AT3G18360 110 / 5e-29 VQ motif-containing protein (.1) Lus10029768 [exp] 58 / 2e-10 AT1G21326 79 / 4e-18 VQ motif-containing protein (.1) Lus10042794 [exp] 57 / 2e-10 AT1G21326 74 / 9e-17 VQ motif-containing protein (.1) Lus10012286 [exp] 44 / 3e-06 AT1G21326 50 / 8e-09 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.012G055900.1 pacid=42783959 polypeptide=Potri.012G055900.1.p locus=Potri.012G055900 ID=Potri.012G055900.1.v4.1 annot-version=v4.1 ATGAGCCCAACGAATCATCAAGCGAAGACCAGCAATATGTACCCTCCACCACCCTTGAAAGTCAACAAGGACTCTCACATGATCAAGAAATCTTCGCCGC CGTCGTCTTCGTCGTCGTCATCTTCATCCTCAGCATCTTCTTCGCTCGGCATTGTAGGTCCTGTCAAACCCCCACAACGCCATCCAGTGATCATTTATAC TCACTCGCCCAAAATCATCCACACAAATCCTAAAGATTTTATGTCACTGGTGCAGAAACTAACGGGTTTGTCGCGATCCGAGGAGGATCCCGCCCCTCAA GTAAAGCGAGAAAATGGTGGTCGTAGGGAGGAAAATAAGAGGAAGGTGAAGATCAATGATGGTAATGAAGGAGGCTTAGGGGATGGACAAGTTCAATATT CTTGTTTTATGCAACCTCTTTTCCAGCCACCAAATCTTAATTACATTCCAGTTTTTGCACCCAATTCAGCTGGATTTCTATGCGCAAACCAGCCATTTTA TAACTACACCGATCCTTTGTATTTCCCTTCTCCAAATAGGAGGAATTCCATCGCCACAAAGTCCACCTTGGAGGTGAAGAATGAGTTCTGCGGGTATTAA
AA sequence Show only first row Show all	>Potri.012G055900.1 pacid=42783959 polypeptide=Potri.012G055900.1.p locus=Potri.012G055900 ID=Potri.012G055900.1.v4.1 annot-version=v4.1 MSPTNHQAKTSNMYPPPPLKVNKDSHMIKKSSPPSSSSSSSSSSASSSLGIVGPVKPPQRHPVIIYTHSPKIIHTNPKDFMSLVQKLTGLSRSEEDPAPQ VKRENGGRREENKRKVKINDGNEGGLGDGQVQYSCFMQPLFQPPNLNYIPVFAPNSAGFLCANQPFYNYTDPLYFPSPNRRNSIATKSTLEVKNEFCGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18360			VQ motif-containing protein (....		Potri.012G055900 [exp]	0	1
					Potri.005G038301 [exp]	2.00	0.8683
AT4G14480			Protein kinase superfamily pro...		Potri.016G049500 [exp]	3.16	0.8522
AT4G19610			nucleotide binding;nucleic aci...		Potri.001G081000 [exp]	6.70	0.8732
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	11.83	0.8547
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	13.26	0.8540
					Potri.001G020080 [exp]	13.41	0.8542
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	16.00	0.8586
AT5G50120			Transducin/WD40 repeat-like su...		Potri.012G076000 [exp]	20.44	0.7686
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	21.49	0.8488
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	23.06	0.8295

Compare expression of checked genes

Potri.012G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.