Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18370 969 / 0 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G05500 92 / 4e-19 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 87 / 1e-17 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 80 / 4e-15 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G20080 74 / 2e-13 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G53590 73 / 6e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61300 69 / 2e-11 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 67 / 6e-11 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G03370 66 / 1e-10 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G51570 66 / 1e-10 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046700 [exp] 1468 / 0 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.006G063900 [exp] 89 / 3e-18 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 87 / 1e-17 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 87 / 2e-17 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G379800 [exp] 71 / 2e-12 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 69 / 7e-12 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G065600 [exp] 66 / 9e-11 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 66 / 1e-10 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.008G038300 [exp] 65 / 1e-10 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009032 [exp] 1185 / 0 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10009672 [exp] 1122 / 0 AT3G18370 840 / 0.0 C2 domain-containing protein (.1) Lus10006193 [exp] 86 / 3e-17 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 76 / 7e-14 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10031244 [exp] 76 / 1e-13 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10031816 [exp] 74 / 1e-13 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10013710 [exp] 73 / 8e-13 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 72 / 2e-12 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 71 / 2e-12 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10026192 [exp] 71 / 3e-12 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G056000.1 pacid=42784266 polypeptide=Potri.012G056000.1.p locus=Potri.012G056000 ID=Potri.012G056000.1.v4.1 annot-version=v4.1 ATGGGAAGAACAAGAAAGGGTAAAGCTGGTTTCAAAGTTGAAGATGTTTTGGAGGTCTTTAATCATCTGTTGGAGGAAAAGCCTTCTTTTGCTTTCTTAA TCCCTTTGATTTTGGTTTGTTGGGGAATTGAGAAATGGGTTTTCTCTTTCTCCAATTGGGTTCCTCTTGTCGTTGCTATCTGGGCTACTTTTCAGTATTG CAGTCATCAACAGAAAGTTATTGTGGAAGACCTAAACAAAAAGTGGAAGCGAGTTGTATTGAACACCTCGCCAATAACACCATTGGAACACTGTGAGTGG CTGAACAAGCTGTTGATGGAAATTTGGATGAACTATATGAACCCAAAGCTTGCAATAAGATTCTCATCCATTGTTGAGAAACGATTGAAACAACAAAGGT TGAAGCTCATGGAAAAACTCGAGTTGCAGGAATTTTCACTTGGTTCATGCCCACCATCCCTTGGTCTTCATGGGACTCGCTGGTCAACTTCTGGTGATCA GAGAATTATGCATTTGGGATTTGATTGGGACTCCAAAGACATGAGCATTTTGTTGCTGGCTAAGCTGGCAAAGCCATTAATGGGAACTGCTCGGATTGTT ATAAACAGCCTCCACATCAAGGGTGAGCTTCTCTTGATGCCAGTTCTGGATGGGAGAGCGGTTTTGTACTCATTTGTGTCAATTCCTGAAGTAAGAATAG GAGTTGCCTTTGGAAGTGGAGGAAGCCAGTCATTACCTGCCACCGAGCTGCCAGGCGTTTCTTCTTGGCTGGTTAAGGTTTTCACTGACACCTTAGTCAA GACAATGATTGAGCCTCGCCGTCGTTGTTTCAGCTTACCAGCAGTAGATTTAAGGAAAAAGGCTGTTGGTGGAATTGTATACGTGTCAGTCATCTCAGCT AGCAAACTTTCTAGAAGTAACCTGAGAGGAAGTCCGCCAAGAAGGGTAAATGGTAGTTTCATAGAGCATTTTGATGATAAATATCTGCAAACATTTGTGG AGGTCGAGCTTGGACATTTGACAAGGAGAACAGATGTGAGACCAGGCTCAAACCCTAGATGGGATTCCACATTTAACATGTTCTTACATGAAGAAACTGG AACTCTTCGATTACATCTTTACAACCGCCCACCCAACAGTGTGAAGTATGATTATCTAGCAAGTTGTGAGATCAAGATGAAGTATGTTGCTGATGATTCA ACAACGTTTTGGGCAATAGGACCCGACTCTGGTGTAATAGCCAAACATGCTGAGATTTGCGGAAAAGAGGTTGAAATGGTTGTTCCATTTGAGGGAGTTA CTTCAGGGGAGTTGACAGTAAAGCTTGTGGTGAAAGAATGGCTGTTCTCTGATGGTTCCCATAGCTTGAACAACGTTAGCTCTCAGAAGTCAATATATGG ATCATCAAATATTCTTTCAAGAACAGGAAGGAAGATTAACGTGGCTGTCATGGAGGGAAAAGATCTTATTTCAAAAGAAAGATCTGGAAAGTGTGACCCA TATGTTAAACTGCAGTATGGAAAGGTCCTACAGAAAACACGGACTGCACATAGCTCTAATCCTCTCTGGAATCAGAAGTTCGAATTTGATGAGATAGTAG ATGATAGATGCCTTAAGATTAAATGCTACAGTGAAGAAATCTTTGGAGATGAGAGCATTGGTAGTGCACGAGTAAATTTGGAAGGTTTGATGGAGGGATT TATCAGGGACATGTGGGTTCCCCTTGAAAAAGTGAATACAGGAGAATTAAGGCTTCAAATAGAAGCAGTACAAGTCAATGACTCTGAAGGATCACGGGGT TCTATGTCAGGTTCATTCAATGGTTGGATTGAACTTGTTCTTGTTGAAGCGAAGGATCTTATTGCTGCTGATCTTAGGGGGACAAGTGATCCATATGTGA GGGTGCAATATGGAAGCTTGAAGAAGAGAACAAAGGTTATGTACAAAACTCTGAATCCTCATTGGAATCAAACCCTCGAGTTTCCTGATGATGGCAGTCC CTTAGAGTTGCATGTGAAAGACTATAATGCCTTGCTGCCCACCTATAGTATTGGTGATTGTGTTGTAGAGTATCAGGGATTGCCTCCAAACCAGATGTCC GACAAGTGGATTCCTCTCCAAGGAGTAACAAGGGGAGAGATCCATGTTCGGATAACTAGGAAAGTTCCAGAACTACAAGCAAGAAACAGTTTGGAGTCTG ACACATCTTTAATCAAATCACACCAAATCTCTAACCAGATGAAACAATTGATGATCAAGTTTCAATCTCTGATTGAGGAGGGCAGCCTAGAGGGGCTCTC GACAGCTTTGAGCGAGATGCAAAGCCTAGAGGACATGCAAGAAGAGTACATGGTACAGATTGAGACTGAGCAAATGCTTCTACTTAACAAGATAAAGGAG CTTGGTCAAGAAATTATGAGCTCATCGTCTTCCTTGAGCAGAAGATCTTCTGGACTTTGA
AA sequence Show only first row Show all	>Potri.012G056000.1 pacid=42784266 polypeptide=Potri.012G056000.1.p locus=Potri.012G056000 ID=Potri.012G056000.1.v4.1 annot-version=v4.1 MGRTRKGKAGFKVEDVLEVFNHLLEEKPSFAFLIPLILVCWGIEKWVFSFSNWVPLVVAIWATFQYCSHQQKVIVEDLNKKWKRVVLNTSPITPLEHCEW LNKLLMEIWMNYMNPKLAIRFSSIVEKRLKQQRLKLMEKLELQEFSLGSCPPSLGLHGTRWSTSGDQRIMHLGFDWDSKDMSILLLAKLAKPLMGTARIV INSLHIKGELLLMPVLDGRAVLYSFVSIPEVRIGVAFGSGGSQSLPATELPGVSSWLVKVFTDTLVKTMIEPRRRCFSLPAVDLRKKAVGGIVYVSVISA SKLSRSNLRGSPPRRVNGSFIEHFDDKYLQTFVEVELGHLTRRTDVRPGSNPRWDSTFNMFLHEETGTLRLHLYNRPPNSVKYDYLASCEIKMKYVADDS TTFWAIGPDSGVIAKHAEICGKEVEMVVPFEGVTSGELTVKLVVKEWLFSDGSHSLNNVSSQKSIYGSSNILSRTGRKINVAVMEGKDLISKERSGKCDP YVKLQYGKVLQKTRTAHSSNPLWNQKFEFDEIVDDRCLKIKCYSEEIFGDESIGSARVNLEGLMEGFIRDMWVPLEKVNTGELRLQIEAVQVNDSEGSRG SMSGSFNGWIELVLVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYKTLNPHWNQTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGLPPNQMS DKWIPLQGVTRGEIHVRITRKVPELQARNSLESDTSLIKSHQISNQMKQLMIKFQSLIEEGSLEGLSTALSEMQSLEDMQEEYMVQIETEQMLLLNKIKE LGQEIMSSSSSLSRRSSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.012G056000 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	1.73	0.9194
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	1.73	0.9015
AT1G01490			Heavy metal transport/detoxifi...		Potri.008G220100 [exp]	3.16	0.9027
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	8.24	0.8818	Pt-EIL3.2
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	8.83	0.8547
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	10.58	0.8677
AT1G74840	MYB		Homeodomain-like superfamily p...		Potri.012G073900 [exp]	12.00	0.8509
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	12.00	0.8505
AT1G27170			transmembrane receptors;ATP bi...		Potri.017G143566 [exp]	13.07	0.8661
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	13.19	0.8688

Compare expression of checked genes

Potri.012G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.