Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18390 935 / 0 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 485 / 2e-157 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G29750 471 / 3e-154 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 465 / 2e-151 ATCFM3A CRM family member 3A (.1) AT4G14510 462 / 8e-150 ATCFM3B CRM family member 3B (.1) AT5G16180 401 / 8e-129 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT2G28480 97 / 3e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 91 / 2e-19 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 91 / 3e-19 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 77 / 2e-14 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350801 [exp] 491 / 1e-159 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.010G077100 [exp] 484 / 1e-158 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.017G116700 [exp] 436 / 4e-141 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 227 / 4e-68 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.013G083000 [exp] 104 / 5e-24 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 99 / 2e-21 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 93 / 6e-20 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 77 / 3e-14 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 66 / 8e-11 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009671 [exp] 957 / 0 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 956 / 0 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 477 / 1e-154 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10027610 [exp] 469 / 1e-153 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 473 / 1e-152 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 471 / 9e-149 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10033576 [exp] 414 / 4e-134 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 271 / 1e-82 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10017618 [exp] 167 / 7e-45 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009566 [exp] 102 / 7e-23 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.012G056100.4 pacid=42782624 polypeptide=Potri.012G056100.4.p locus=Potri.012G056100 ID=Potri.012G056100.4.v4.1 annot-version=v4.1 ATGATGACCTTCACAACTGCAAAATTAACAGAATTGCCACTGAGAACCACCTCCACACTGCCCCTCAGCTCCCACTCCCTCTTATCTAAAATCGCCACAT TTCAATCCCTCAAAAAACCCTTCTCCACTGCAACGTCATCTTCACTTAGAACCAACAAAACCCCTAAAACCCAACAAAAAAACCCTAATTGGATCTCCAA ATGGAAGCCTTCTCAAAACCATTCGATCAAAAACCCTCCATCAGAAGTCAGTCAAGAAAAGCCTCATTATTTCTCCAATGACAAGGGCCAAAATGCCATT GAAAGAATCGTACTACGGTTAAGAAATTTAGGGTTAGGATCAGACGATGAAGATGAATTAGAAGGATTGGAGGGGAGTGAAATCAATGGTGGTGGTTTAA CGGGAGAAGAAAGACTTGGAGACTTGTTAAAGAGAGAGTGGGTCCGGCCGGATACAGTGGTTTTCAGTAACGATGAGGGTAGTGACAGTGATGAATCTGT GTTGCCATGGGAGAGGGAAGAAAGGGGGGCAGTGGAAATGGAAGGAGGGATAGAGAGTGGGAGGAAAAGGAGAGGAAAGGCGCCGACTTTGGCAGAATTG ACAATAGAAGATGAGGAATTGAGGAGGCTGAGGAGAATGGGGATGTTTATTAGGGAGAGGATTAGTATTCCGAAAGCTGGGATTACTAATGCGGTTTTGG AGAACATTCATGATAGGTGGAGGAAAGAAGAGTTGGTTAGACTTAAGTTTCATGAGGTTCTTGCTCATGATATGAAGACTGCTCACGAGATTGTTGAGCG TCGAACAGGAGGATTAGTTATATGGAGAGCAGGGAGTGTTATGGTGGTGTTTCGTGGAACTAACTATCAAGGGCCTCCATCTAAGTTGCAACCTGCTGAT AGAGAAGGGGATGCTCTCTTTGTCCCAGATGTTTCTTCTACTGACAGTGTTATAACGAGAAGCAGCAACATTGCAACTTCATCTTCTGAAAAGAGTAAAT TAGTAATGAGGATAACAGAACCTACTGAGAACATGACAGAAGAGGAAGCTGAACTTAACAGCCTGCTAGATGATTTGGGACCCCGTTTTGAGGAGTGGTG GGGTACAGGATTACTTCCAGTTGATGCTGATTTGCTTCCTCCAAAAGTTCCTTGTTACAAAACTCCTTTTAGGCTTCTTCCTGTTGGAATGCGGGCACGG CTTACTAATGCGGAAATGACTAATATGCGAAAGCTTGCTAAAGCACTTCCTTGTCATTTTGCCCTTGGGAGAAACAGAAACCATCAAGGGCTGGCTGTCG CTATACTCAAGCTTTGGGAGAAAAGCTTAGTTGCAAAGATTGCTGTAAAACGGGGTATCCAGAATACAAATAACAAACTGATGGCAGATGAACTAAAGAT GTTAACTGGTGGTGTATTATTGCTCAGAAACAAGTATTACATTGTAATATTCCGAGGAAAGGATTTTCTGCCACAGAGTGTAGCTGCTGCTTTAGCAGAG AGACAGGAAGTGACGAAACAGATTCAAGATGTTGAAGAGAGAGTGCGAAGCAATTCAGTGGAGGCAGCACCATCAGGTGAAGATGAAGGAAAGGCGCTTG CAGGCACATTGGCAGAGTTTTATGAGGCTCAAGCACGGTGGGGAAGAGATATATCCACTGAAGAGCGTGAAAAGATGATTGAAGAAGCTTCCAAAGCTAA AACTGCGAGGCTCGTCAAACGAACTGAACATAAATTAGCTATTGCCCAGGCCAAGAAGCTTAGAGCTGAGAGTCTGTTATCCAAGATAGAAACTACAATG GTTCCTTCTGGTCCTGATTTTGATCAAGAAACAATCAGTGAGGAGGAAAGGGTTATGTTTCGCAGAGTTGGTTTAAGAATGAAGGCTTACTTGCCACTAG GTATTCGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAAGCATAGAGAACTTGTGAAGCTAATATCCAAACAAAAGACTCTTGCATT TGTGGAAGATACAGCAAAATTGTTGGAATATGAGAGTGGTGGGGTATTAGTGGCAATAGAAAGAGTTCCCAAAGGGTTTGCTCTTATTTATTATCGTGGG AAGAATTACCGTCGACCAATCAGCATAAGGCCAAGAAACCTTCTAACAAAGGCAAAAGCATTGAAGCGTTCAGTGGCCATGCAAAGACATGAGGCCCTTA GTCAGCACATATTTGAATTGGAAAAGAACATCGAAGAAATGGTGAAAGAAATGGGGCTTTCTAAAGAAGAAGAGAATGAGAATAATTGGAGCTCAGAGGA ACATGCCCCCTTAAATAATGTCTCAAAATTAACCCAAAGTGAGGATAAAGCTTTTTTCACCGAGTCTGATAGCGAAGATGATTATAATGAGGGCATTAAT TGTGAAGCTGCCGAAGATTTTTGA
AA sequence Show only first row Show all	>Potri.012G056100.4 pacid=42782624 polypeptide=Potri.012G056100.4.p locus=Potri.012G056100 ID=Potri.012G056100.4.v4.1 annot-version=v4.1 MMTFTTAKLTELPLRTTSTLPLSSHSLLSKIATFQSLKKPFSTATSSSLRTNKTPKTQQKNPNWISKWKPSQNHSIKNPPSEVSQEKPHYFSNDKGQNAI ERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVRPDTVVFSNDEGSDSDESVLPWEREERGAVEMEGGIESGRKRRGKAPTLAEL TIEDEELRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRAGSVMVVFRGTNYQGPPSKLQPAD REGDALFVPDVSSTDSVITRSSNIATSSSEKSKLVMRITEPTENMTEEEAELNSLLDDLGPRFEEWWGTGLLPVDADLLPPKVPCYKTPFRLLPVGMRAR LTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAE RQEVTKQIQDVEERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLVKRTEHKLAIAQAKKLRAESLLSKIETTM VPSGPDFDQETISEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKGFALIYYRG KNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEMVKEMGLSKEEENENNWSSEEHAPLNNVSKLTQSEDKAFFTESDSEDDYNEGIN CEAAEDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	0	1
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	1.00	0.9771
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	1.41	0.9745
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	4.00	0.9588
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	5.19	0.9593
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	5.47	0.9523
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	5.65	0.9410
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	6.16	0.9332
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	9.38	0.9369
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	11.61	0.9555
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	13.26	0.9176

Compare expression of checked genes

Potri.012G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.